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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0237800 |
| Transcript ID | LotjaGi4g1v0237800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA glycosylase; TAIR: AT3G47830.1 DNA glycosylase superfamily protein; Swiss-Prot: sp|F4JCQ3|DG783_ARATH Putative DNA glycosylase At3g47830; TrEMBL-Plants: tr|A0A151QT39|A0A151QT39_CAJCA Protein ROS1; Found in the gene: LotjaGi4g1v0237800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55366302..55369374) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGAAGAAAAAGAAAGGAAGAGCAAAACGAAGTTGATCAGAGAGAATGGAGAAGAGGCGGAAAAGGAAGCAGCAGGAG GTGGCGGAGCTCAAGGAACAACCTCCGCCTCAGCCGAAATCGGTTCGTGTGGAAGAGAATCTGAAGAACCCATTCCCATC TCACACTCGACCCACTCCACAAGAATGCCAAACCGTACGCGACACTCTCTTATCCCTCCACGGCATCCCGCCGGAACTCG CCAAGTACCGCCAACTCCAACCACCCAACTCCGGCACGGAACCGGAGGAAACCGTTCTCGACGGTCTCGTCCGAACCGTG CTCTCTCAGAACACCACAGAGGCCAATTCCCAAAAGGCTTTCGCTTCTCTCAAATCCTCCTTCCCCGATTGGGAACTTGT ACGTATATAGGTAACAGTTTACAGCTAGGGTTTTGTGTTTGCGTGAGTTAGGGTTTTGAAACGGTGCCGTTTTTGTTGTT GAAGGTGCTTGGTGCTGAGGCTAAGGATTTGGAGGATGCTATTCGCTGCGGTGGTTTAGCTCCGACGAAGGCGAAATGTA TTAAGAATGTGTTAAGTTGCTTACTTGAGAGGAGAGGGAAATTGTGTTTGGAGTATTTGAGGGATTTGTCTGTTGATGAA ATTAAGGCTGAGCTCTCTGTTTTCAAAGGAATTGGTCCCAAAACAGTAATCTTCGTTTGCTCATTTCTCCTTTTTCAGCT TATTTGATTAGTAATGTTGGGTTCTTTATGGCATTGTTGTGGTTTTAGTTCATTGATTATGGCAAATGTTTTACTTTGAA TAATGACATAGTTGCTACTTGCTACTGCTGCATTGTCCTATGTTGGTCACTTTTGTCACTTACTCTAATTGTGCCTAAGA GTATGTCTTCATCTACGGAAAGGAGTGGAATGGCATTGAAATGAATTACATTAGGTTCGAGTTGTGGAAACTAGGATGGA ATGAAATGAATTATGATGAGTGGATTCAAGTTTATTACATCCAATTTCATTCCCTAGAATTTGAGGGAATTGGAACTTGG AAGGAGCAAGTTTTCATTTTATTGATTCCATCATTAAAATATTCAAACAATAGAATTGTAATTTTATTCCATTCCGTTTT ATTCTATTCCTCTTCACTTTATTCTATCCCATTCCATTTCATTTTACTTTCCATCAAATATCCATACATAGCAAGAAAGT ATGTATTAGGGGAGTAGTTTCAGGTCTTCCTTTGCCTTTGCTTCAGCAAACCATATCTTGAACATTTCTAACTTCCTATT ATTCAATTGGCAGTAATTCTCCAAGTAAAACTTAAGCATACTTTTTTTGGCTTCACCCACTTAGCAGTCTTGTCAATTAG CCAGATATATGTGAACTGATGAATGCTTTGCATTGCATTTGTCCCTCTTTTGAAGGCACTGCTATTTGATAGGAATTAGA ATTGCTTTTGAAGGCATCCCTAGAAATTAGATTAAGCAATTGATCTAACATTTTATTTTCTTTGTTGATTGAATTACTTA GTGTACGATATTTTCTACATGGCTTATATGCAAAACCTTTGTTATATTTCTTCTTCAATTGCAATGTTATGATAGCAGTC CACCACAAATAATGGAAGTTATTATCATGAGCATTAGATGAGCATTAGTATGTGAATGCAAAGCTAATTCATCCTGAAAA ATGAGATGATTTGTTATAACTTGATAAAAATGTGAACTCTGGCACAAATGTGGTTTCCCTCTCTCCATTCAATTTCTTGT ACGCGATCTCTTTTCGATATTAATGCCTGCTTCTGTACTTTGTTTCTCATTCAGCTGCAACTATTCTCCAAGATCAAAAG TTTAAATTGATCTCAACATCTGTATACATTTTGTGGAAACCTTGAGAAAATTATAAACATTCCTATGATGATTTGTAAGT GTGTGAACTGCTCTCAGTACAATGGATAAAGTATGACAGATGTTATTCATTGGATCATTTATTCTGTCAACAAAATATAG ATTGTATTTTATTGCATTCTTAGCAACACCATGTCAAATTTAGAACATATTAAAATTCCATTGAACCTAAATGTGCATGA CTTTTCTCCCTTTGTATTGATTTCTCTAATTACGTGATTGTGATAGGTGGCTTGTGTGTTGATGTTCAATCTTCGGCAAG ATGATTTTCCAGTGGACACTCACGTATGTATGATTCCATCTTTCTTTTACAGCATTTGACTCCATTGAGTTATTTCTAAG GCTTGAATATTTATGCAGATATTTGAGATTGCAAAAACTATCGGTTGGGTACCAGCTGCTGCAGACAGAAATAAAACGTA TCTTCATCTAAACCAGAGGATCCCAAATGAACTTATGTTTGACTTGAATTGCCTTCTGTATACGCACGGGAAGCTCTGCA GTAAATGCTCCAGTAAGAGGGGTAACCAGAAACAACAAAAGTGTAATGATAATCCATGCCCTTTATTGGATTATTATAAA GAGTTCGAACCTTGACTTTTGCTAACAAATTAAGGTAATGATGGTATGAACTTAGGCAGGAAGAAATTTCTTAAATTAGT TAAGAAATGCTAACAAATTTTGTGCTTGTGCATCAAACACTTGTACAGTTTGGACTTTCTGAAGATGTTCTTTCTTTCAA GCCAGTAAATAGGTCTCACCCGAAAAATGTAAACTATTTCACCAAATCAACATTGTGGCCTTTTTACTCGTGGCTTTTTG AACATATTATAGATTATGTGAGTGTGAAACTCAACGGTATCTCAAATGACGTAATTAGATTCAACTTGCTTCTTTTTCTC CTTTAGGGAAAAGGTAAGTTCGTGGTTACACTCTTCAAATTGGATCCATTACAACATGAGTTCAAATGGTGCAACTATTC CTTGATAAGTATCCTAACGAGAAAGACAACTGAGTTCAAGAGTGTAATAGTTAGTTTCACTTGGGACAAATGCAAGAGAC TTTAATTTTTCTTATGTGCCAAAACCACGGTGTTAGAGATTGTTGGTAGTCTATATATTGATTATATTCTATAATGAACT ATCTTACCCCACCAAGGATCAGGTAAACGAAGC
CDS sequence (LotjaGi4g1v0237800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGAGGCGGAAAAGGAAGCAGCAGGAGGTGGCGGAGCTCAAGGAACAACCTCCGCCTCAGCCGAAATCGGTTCG TGTGGAAGAGAATCTGAAGAACCCATTCCCATCTCACACTCGACCCACTCCACAAGAATGCCAAACCGTACGCGACACTC TCTTATCCCTCCACGGCATCCCGCCGGAACTCGCCAAGTACCGCCAACTCCAACCACCCAACTCCGGCACGGAACCGGAG GAAACCGTTCTCGACGGTCTCGTCCGAACCGTGCTCTCTCAGAACACCACAGAGGCCAATTCCCAAAAGGCTTTCGCTTC TCTCAAATCCTCCTTCCCCGATTGGGAACTTGTGCTTGGTGCTGAGGCTAAGGATTTGGAGGATGCTATTCGCTGCGGTG GTTTAGCTCCGACGAAGGCGAAATGTATTAAGAATGTGTTAAGTTGCTTACTTGAGAGGAGAGGGAAATTGTGTTTGGAG TATTTGAGGGATTTGTCTGTTGATGAAATTAAGGCTGAGCTCTCTGTTTTCAAAGGAATTGGTCCCAAAACAGTGGCTTG TGTGTTGATGTTCAATCTTCGGCAAGATGATTTTCCAGTGGACACTCACATATTTGAGATTGCAAAAACTATCGGTTGGG TACCAGCTGCTGCAGACAGAAATAAAACGTATCTTCATCTAAACCAGAGGATCCCAAATGAACTTATGTTTGACTTGAAT TGCCTTCTGTATACGCACGGGAAGCTCTGCAGTAAATGCTCCAGTAAGAGGGGTAACCAGAAACAACAAAAGTGTAATGA TAATCCATGCCCTTTATTGGATTATTATAAAGAGTTCGAACCTTGA
Protein sequence (LotjaGi4g1v0237800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKRRKRKQQEVAELKEQPPPQPKSVRVEENLKNPFPSHTRPTPQECQTVRDTLLSLHGIPPELAKYRQLQPPNSGTEPE ETVLDGLVRTVLSQNTTEANSQKAFASLKSSFPDWELVLGAEAKDLEDAIRCGGLAPTKAKCIKNVLSCLLERRGKLCLE YLRDLSVDEIKAELSVFKGIGPKTVACVLMFNLRQDDFPVDTHIFEIAKTIGWVPAAADRNKTYLHLNQRIPNELMFDLN CLLYTHGKLCSKCSSKRGNQKQQKCNDNPCPLLDYYKEFEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 45 | 45 | - | – | |
| PANTHER | 13 | 277 | 265 | 7.9E-127 | – | |
| PANTHER | 13 | 277 | 265 | 7.9E-127 | – | |
| SUPERFAMILY | 68 | 277 | 210 | 2.51E-39 | ||
| Gene3D | 80 | 191 | 112 | 5.5E-34 | – | |
| CDD | 87 | 247 | 161 | 1.16118E-30 | ||
| Pfam | 88 | 231 | 144 | 5.7E-11 | ||
| SMART | 92 | 249 | 158 | 8.5E-19 | ||
| Gene3D | 192 | 280 | 89 | 3.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. |
Expression pattern of LotjaGi4g1v0237800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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