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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0391200 |
| Transcript ID | LotjaGi3g1v0391200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | A/G-specific adenine DNA glycosylase; TAIR: AT4G12740.2 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|F4JRF4|MUTYH_ARATH Adenine DNA glycosylase; TrEMBL-Plants: tr|A0A0R0J018|A0A0R0J018_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0391200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78934092..78938083) extracted from Lotus japonicus Gifu genome v1.2.
CTCATTGCCGCTTTGTATTCCCATTTCTCATTTCTCAATGGCATAATAACATTGAGTTTGAACGCCAACAACGTTGGACA GTGAAGAAACCACCGTGTATGTTTTTAAGATTACAATTGCCACCACTGGTTCCCAACATGTCGGAGAAGAACAACACAAG GAGGAAGAGTGTTAGGGTCAGCAAAAAGCCACGTCCTTCAGCGGAAACTGAAGACATAGAGGACGCAGTGTCCTTCACCA ACGACGAGACCCACAAACTGAGAGTGTCTCTCTTGGCTTGGTACGACAAAAACCGCAGGGACCTTCCTTGGAGAACTACC CTAGACCCTAACAATGAAGAACAAGAGGAGGAAGAAGTGGAAAAGAGAGCTTATGGTGTGTGGGTATCTGAGATTATGCT GCAGCAAACAAGGGTTCAGACTGTTGTTGCCTATTACAACCGTTGGATGGAAAAATGGCCCACCATTCACCATCTCGCAC AAGCTTCTCTTGAGGTTTTTCATTCTATCCGAACTTCAGTGCTGATGATTTGAATTTGATACCATGGTTTCACATTCCTG TTTATAGTTTGTGAGGTTTATTGATGCTTTTTGAGTGACATAAGCTAATGAAGCTATGAGACAATTTGTGCAAAAATAAG CTGTTCATTTGTTTTTTCTCTGAGTGCCCGTATTTGAAAAACATTTGTTGTGATTTGTAGACTACTTATATCCTTACCTT GCAATTGTTGCCATCATTGTGCAGGAAGTAAATGAGATGTGGGCAGGTTTGGGCTACTATCGAAGAGCTCGTTTTCTTTT AGAGGTGCACTCTCATCACACTAGTGTTTTTCATCACTGCCTAGTGGCCACTGTTTTTCTTATTGTCTTTCTGAGATTTA TCTAAAGCCTGGAGGGAAAGGCATACTTTAGACTAAACCCTACAAGCCTCTCTAATAATCGATTGTAGACTGTTTGAATT TCTAATAGCTAATGTGAGAGTGAAACCTTTATCATTATTTATTTTCTGCCTTCTTTGTAAAAGTAAGAACTGAGAACAGC TAAATAGGGCTTATAATGCAAATGTCAAAGTCTCACATGATAGACATTGCCAAACATAGCCTCCATAGAGTATCCGAAGT TTCTTTAGGTCAAGGACATTCAGTTTCTTATCGAACAACTTTTGCTTCTACGTTTGATCTATGTTGAAAGATCCTCAATC TCATGTTATGAATTGTGAGAAGTGAAGTCCTGCTTAACAAAAGTACAGGCCTAGATCAAAAGATAAAAGTACACATATAC TATTACATGCCGCAAGGTTTGATAGGAGTGTTTCCATTTCTGCTTTCAGGGGGCGAAGAAAATAGTTGCAGAAGGAGGCA AAATTCCTCGGCTGGCATCTATGCTACGAAAGATTCCTGGAATAGGAGACTATACATCTGGAGCAATTGCATCTATAGCA TTCAAAGAGGTGACAGTTTCTGTTATTTTGGTTCCTGAAAAGTAACTATTGGCTGTTGCTCATGCATTAATATTTTCAGG CAGTTCCTGTTGTTGATGGAAATGTGGTTAGGGTGATAGCGAGACTAAGGGCTATTTCTGCAAATCCAAAAGACTCAGTA ATTGTTAAGAGAATTTGGTGAGTTTTTCTGAACTTCTAGTTCCGGGAACTAATTTTTCATCATGTTAATCTTGTCGAAGA GTCTAATCTATGTTTTAATTTGGAACAAATTATTCATCATTGTTTTCTCTTTGGAGAGTCTAATCTCAAATTCATGCAAC GTTTGACCTGATTAAGAAACAATGGGGAAAAAAAGAAGTTTCTCTATGCATCAAACTCACACATCTATGTTTATTGGTGG CTTTGAGTTTCTTTTCTGACATGATCTGCCTCTCAATAAGTGTCTTCTATTTTAGTATTGATTCATTCCCACTTTCCATC TCTTTCCCACTCACATTCTCTTCCGCCTTTCAAAAAAAAAGCTTCTCTTCCTATCTCTCCCTTCTGTTACCATCATATCA TCTATCATATCTCTCATTTTCCTCTATTCTCTTTCTTTATCTCACTAGGTGTAGGTGTGTTTCGAGTGGCAATGAAAAAT TATTCCTTCTTTTTATTGGTTGTGCCTAAGGGATATATGAAGGCTATACATGATAGGCTGAGTATAACATGATTGTTGGC AGAAGCTTTATTATTTTACACTCGTTGCTTACATTTCTTTTCCCTTACTAATTTTTTTCTTCATTGTTGTGGGTTGGAAT GGAGATTAAGGAAGTTAGCAGCTCAGTTGGTCGATCCTCTTCGTCCTGGGGATTTCAATCAGGCTCTCATGGAACTTGGC GCAACTGTATGCACCCCTTTGAACCCAAGCTGTTCCTCATGCCCAGCATCAGAATTTTGTCATGCACTATCAAATTCTAA ACATGATAGTACAGTAGCAGTTACAGATTATCCTGCTAAAAGTGTGAAGGTTAAACAAAGAAGTGATTTTTCTGCTGTAT GTGTTGTTGAATTACTTGGAGCCCGAACATTGTTAGATGAAAACCAGACTAGCAGCAAATTTATAATTGTAAAAAGGCCT GATGAAGGATTGCTTGCTGGTCTTTGGGAGTTTCCATCTATATTGCTTGATGGAGAGACAGATCCATTGGCGAGAAGAGA AGCAACAAATTGCTTCTTAAAAGAAAATTTCAAAATTGATATAAGAAAGACTTGCAATATCGTTGTGAGAGAAGATGTTG GGGAATTTGTTCATATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTTCTGATGTTACAATTGAAAGGTTTGGTC CTCTTTCTATATGGCATTACAAGTTGAATTTAGTCTTTTTGTTTCTCCATTTCATATTTACTCTTAAGTAGATTATTCTG GATATTTATTTCATGTCATTAAATAGTAAGGAACTAAATTTCAGTATTTTTTGTATTTTCGTATTTTATATTCGTCTAGT ATCTGAGATTTTGTGGTTCAAAGAACACTTCAAAAATTGTTCTGCAGTATTAGCTATATAGCCTATGGATTTGCATGAAA ATGAATAACGATCACACTGAAATCTTTACGGCTTCTTTTTTGTACTAATGTTAATTTTTTCCTTCTGGAAGGGGCAGCAG ATGATTTAGTCGAGAGCCAGGGCAACGAAACTACAACTTGGAAATGTGTTGACAGCAATGCCCTATCGAGTATGGGACTA ACAACCAGCGTAAGAAAGGTATTATGCTGCAGTTTGCAACTCCACAGTTCATACGCATATTTTTGGTTGTGTACATGGAT CACTGATCTATATTAAAGATATCGACCGGTTTTACGTTGGTTGTCCAAGGCCTAACAAAACCTTCCTCATTTATCCGGGC TTAGGACCGGAAGGGTAAAATTAAATTGCATTAGCCCTCCTCTTTAGCTAGAAAGTAACGGATTCTTCTTATAGATTGTG CTGTTTGCAAGAGAATTTATTATGCAAAGATTTTTAGCTTCTCTTGATTCAAGGATTAAATTTGAAGTTTCTAATTCTCC TTGCTTTATATATCTTGATAAAATACTGTGGTATCTTAAATCTGTTACACTACTGCAGGTGTACAACATGGTTCAAAAGT TTAAGCAGAAAAGACTTCCTTCTAACCACGTGCCAACCAAAAAGAGAAGTAGAACGACCAAGAGAAAATCAGCATAGTGA AACCCAATTTGTTGCGTTGAGAAAATTAATATGTTGGACTTCAAGCAGAGCAGTGTAACACTTTTTTGTTTTTTTTTTTC TTAGTTGACTATATCTGTAATTGTGCGAGGTACTTATGGCTTTGAATACCTTTGCTGTGTATGTTTCTTCGTTATTGTGG CACCAACATCTCAAATTTCTTTTGGACAGAGCTGTCAGCAAGAAATTAAGAAGAAAAAACTGCATGGCATAAATTATGTT ATACATACAGCCAAAAACCCCTCTGTATCTGTGTAGTTTGTATCATAATTTGTTACTATATTTCTGTAAAAG
CDS sequence (LotjaGi3g1v0391200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTAAGATTACAATTGCCACCACTGGTTCCCAACATGTCGGAGAAGAACAACACAAGGAGGAAGAGTGTTAGGGT CAGCAAAAAGCCACGTCCTTCAGCGGAAACTGAAGACATAGAGGACGCAGTGTCCTTCACCAACGACGAGACCCACAAAC TGAGAGTGTCTCTCTTGGCTTGGTACGACAAAAACCGCAGGGACCTTCCTTGGAGAACTACCCTAGACCCTAACAATGAA GAACAAGAGGAGGAAGAAGTGGAAAAGAGAGCTTATGGTGTGTGGGTATCTGAGATTATGCTGCAGCAAACAAGGGTTCA GACTGTTGTTGCCTATTACAACCGTTGGATGGAAAAATGGCCCACCATTCACCATCTCGCACAAGCTTCTCTTGAGGAAG TAAATGAGATGTGGGCAGGTTTGGGCTACTATCGAAGAGCTCGTTTTCTTTTAGAGGGGGCGAAGAAAATAGTTGCAGAA GGAGGCAAAATTCCTCGGCTGGCATCTATGCTACGAAAGATTCCTGGAATAGGAGACTATACATCTGGAGCAATTGCATC TATAGCATTCAAAGAGGCAGTTCCTGTTGTTGATGGAAATGTGGTTAGGGTGATAGCGAGACTAAGGGCTATTTCTGCAA ATCCAAAAGACTCAGTAATTGTTAAGAGAATTTGGAAGTTAGCAGCTCAGTTGGTCGATCCTCTTCGTCCTGGGGATTTC AATCAGGCTCTCATGGAACTTGGCGCAACTGTATGCACCCCTTTGAACCCAAGCTGTTCCTCATGCCCAGCATCAGAATT TTGTCATGCACTATCAAATTCTAAACATGATAGTACAGTAGCAGTTACAGATTATCCTGCTAAAAGTGTGAAGGTTAAAC AAAGAAGTGATTTTTCTGCTGTATGTGTTGTTGAATTACTTGGAGCCCGAACATTGTTAGATGAAAACCAGACTAGCAGC AAATTTATAATTGTAAAAAGGCCTGATGAAGGATTGCTTGCTGGTCTTTGGGAGTTTCCATCTATATTGCTTGATGGAGA GACAGATCCATTGGCGAGAAGAGAAGCAACAAATTGCTTCTTAAAAGAAAATTTCAAAATTGATATAAGAAAGACTTGCA ATATCGTTGTGAGAGAAGATGTTGGGGAATTTGTTCATATTTTCAGTCACATTCGCCTCAAGTTGTATGTTGAATTTCTG ATGTTACAATTGAAAGATGATTTAGTCGAGAGCCAGGGCAACGAAACTACAACTTGGAAATGTGTTGACAGCAATGCCCT ATCGAGTATGGGACTAACAACCAGCGTAAGAAAGGTGTACAACATGGTTCAAAAGTTTAAGCAGAAAAGACTTCCTTCTA ACCACGTGCCAACCAAAAAGAGAAGTAGAACGACCAAGAGAAAATCAGCATAG
Protein sequence (LotjaGi3g1v0391200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLRLQLPPLVPNMSEKNNTRRKSVRVSKKPRPSAETEDIEDAVSFTNDETHKLRVSLLAWYDKNRRDLPWRTTLDPNNE EQEEEEVEKRAYGVWVSEIMLQQTRVQTVVAYYNRWMEKWPTIHHLAQASLEEVNEMWAGLGYYRRARFLLEGAKKIVAE GGKIPRLASMLRKIPGIGDYTSGAIASIAFKEAVPVVDGNVVRVIARLRAISANPKDSVIVKRIWKLAAQLVDPLRPGDF NQALMELGATVCTPLNPSCSSCPASEFCHALSNSKHDSTVAVTDYPAKSVKVKQRSDFSAVCVVELLGARTLLDENQTSS KFIIVKRPDEGLLAGLWEFPSILLDGETDPLARREATNCFLKENFKIDIRKTCNIVVREDVGEFVHIFSHIRLKLYVEFL MLQLKDDLVESQGNETTTWKCVDSNALSSMGLTTSVRKVYNMVQKFKQKRLPSNHVPTKKRSRTTKRKSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 7 | 41 | 35 | - | – | |
| PANTHER | 18 | 462 | 445 | 3.7E-188 | – | |
| PANTHER | 18 | 462 | 445 | 3.7E-188 | – | |
| Gene3D | 53 | 270 | 218 | 2.5E-94 | ||
| SUPERFAMILY | 54 | 273 | 220 | 9.58E-66 | ||
| Gene3D | 68 | 192 | 125 | 2.5E-94 | – | |
| CDD | 92 | 248 | 157 | 3.03916E-48 | ||
| Pfam | 96 | 228 | 133 | 2.8E-22 | ||
| SMART | 100 | 250 | 151 | 2.3E-44 | ||
| Gene3D | 291 | 450 | 160 | 2.7E-32 | – | |
| SUPERFAMILY | 320 | 444 | 125 | 4.76E-13 | ||
| Pfam | 320 | 440 | 121 | 2.2E-14 | ||
| CDD | 321 | 443 | 123 | 5.36474E-19 | ||
| MobiDBLite | 451 | 470 | 20 | - | – | |
| MobiDBLite | 452 | 470 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | Base-excision repair | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0391200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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