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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027079
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.088s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0044669.1
n.a. general transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1| chr0 14752703 14754710 -
2 domain predictions
3 GO terms
Lj0g3v0044679.1
n.a. general transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1| chr0 14754926 14755849 -
2 domain predictions
3 GO terms
Lj0g3v0101459.1
n.a. general transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1| chr0 43057392 43059599 -
2 domain predictions
3 GO terms
Lj3g3v0642530.1
n.a. PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1| chr3 6942643 6943497 +
2 domain predictions
3 GO terms
Lj5g3v1697110.1
n.a. PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1| chr5 24167953 24178004 -
2 domain predictions
3 GO terms
Lj5g3v1697110.2
n.a. PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1| chr5 24167953 24180393 -
2 domain predictions
3 GO terms
LotjaGi5g1v0258200.2
n.a. BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); TAIR: AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Swiss-Prot: sp|Q3ECP0|TFB1A_ARATH Probable RNA polymerase II transcription factor B subunit 1-1; TrEMBL-Plants: tr|I1LCH7|I1LCH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0258200 LjG1.1_chr5 56668676 56680028 +
2 domain predictions
3 GO terms