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GO:0006289

View this GO term in other databases

Overview

Field Value
Namespace Biological process
Short description Nucleotide-excision repair
Full defintion A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Subterm of

Relationships

The relationship of GO:0006289 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

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Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
PMID
Molecular mechanism of nucleotide excision repair.de Laat WL, Jaspers NG, Hoeijmakers JH
Genes Dev. 1999 Apr 1; 13 (7): 768–85.PMID: 10197977

Associated Lotus transcripts 57

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0044669.1
– General transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1|
GO terms
3
Lj0g3v0044679.1
– General transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1|
GO terms
3
Lj0g3v0067129.1
– PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Glycine max] gi|356508382|ref|XP_003522936.1|
GO terms
4
Lj0g3v0101459.1
– General transcription factor IIH component, related [Medicago truncatula] gi|92882353|gb|ABE86684.1|
GO terms
3
Lj0g3v0134359.1
– PREDICTED: N-glycosylase/DNA lyase OGG1-like isoform X1 [Cicer arietinum] gi|502135915|ref|XP_004502497.1|
GO terms
3
Lj0g3v0181229.1
– N-glycosylase/DNA lyase [Medicago truncatula] gi|357463557|ref|XP_003602060.1|
GO terms
3
Lj1g3v0807620.1
– PREDICTED: general transcription factor IIH subunit 3-like [Glycine max] gi|356509424|ref|XP_003523449.1|
GO terms
3
Lj1g3v3328650.1
– RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1|
GO terms
4
Lj1g3v4107020.1
– General transcription factor IIH subunit [Medicago truncatula] gi|357509341|ref|XP_003624959.1|
GO terms
3
Lj2g3v1022790.1
– CDK-activating kinase assembly factor MAT1 [Medicago truncatula] gi|357495969|ref|XP_003618273.1|
GO terms
4
Lj2g3v1022790.2
– CDK-activating kinase assembly factor MAT1 [Medicago truncatula] gi|357495969|ref|XP_003618273.1|
GO terms
4
Lj2g3v1106410.1
– CDK-activating kinase assembly factor MAT1 [Medicago truncatula] gi|357495969|ref|XP_003618273.1|
GO terms
4
Lj2g3v1155470.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
4
Lj2g3v2558970.1
– DNA repair protein complementing XP-C cells-like protein [Medicago truncatula] gi|357492015|ref|XP_003616296.1|
GO terms
3
Lj3g3v0044230.1
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X2 [Cicer arietinum] gi|502080701|ref|XP_004486650.1|
GO terms
5
Lj3g3v0044230.2
– PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Cicer arietinum] gi|502080698|ref|XP_004486649.1|
GO terms
5
Lj3g3v0642530.1
– PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1|
GO terms
3
Lj3g3v0707070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
4
Lj4g3v0451070.1
– PREDICTED: general transcription factor IIH subunit 4-like [Cicer arietinum] gi|502142615|ref|XP_004505045.1|
GO terms
3
Lj4g3v0451070.2
– PREDICTED: general transcription factor IIH subunit 4-like [Cicer arietinum] gi|502142615|ref|XP_004505045.1|
GO terms
3
Lj4g3v2973670.1
– PREDICTED: DNA repair helicase XPB1-like [Cicer arietinum] gi|502139224|ref|XP_004503689.1|
GO terms
3
Lj4g3v2978970.1
– PREDICTED: DNA repair helicase XPB1-like [Glycine max] gi|356513365|ref|XP_003525384.1|
GO terms
3
Lj4g3v3113250.1
– General transcription factor IIH subunit [Medicago truncatula] gi|357488601|ref|XP_003614588.1|
GO terms
3
Lj5g3v1697110.1
– PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1|
GO terms
3
Lj5g3v1697110.2
– PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1|
GO terms
3
Lj5g3v2215070.1
– Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1|
GO terms
4
LotjaGi1g1v0259100.1
– General transcription factor IIH subunit, putative; TAIR: AT1G18340.1 basal transcription factor complex subunit-like protein; Swiss-Prot: sp|Q8LF41|TFB4_ARATH RNA polymerase II transcription factor B subunit 4; TrEMBL-Plants: tr|G7J304|G7J304_MEDTR General transcription factor IIH subunit, putative; Found in the gene: LotjaGi1g1v0259100
GO terms
3
LotjaGi1g1v0263300.1
– N-glycosylase/DNA lyase; TAIR: AT1G21710.1 8-oxoguanine-DNA glycosylase 1; Swiss-Prot: sp|Q9FNY7|OGG1_ARATH N-glycosylase/DNA lyase OGG1; TrEMBL-Plants: tr|A0A0S3RDM0|A0A0S3RDM0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0263300
GO terms
3
LotjaGi1g1v0550600.1
– RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600
GO terms
4
LotjaGi1g1v0605700.2
– Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700
GO terms
4
LotjaGi1g1v0605700.3
– Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp|Q9ATY5|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr|K7K2I9|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700
GO terms
4
LotjaGi1g1v0661700.1
– GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|A0A1J7IMI8|A0A1J7IMI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661700
GO terms
3
LotjaGi1g1v0661700.2
– GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|G7L5Y2|G7L5Y2_MEDTR General transcription factor IIH subunit 2; Found in the gene: LotjaGi1g1v0661700
GO terms
3
LotjaGi1g1v0661700.3
– GTF2H2; TAIR: AT1G05055.1 general transcription factor II H2; Swiss-Prot: sp|Q9ZVN9|TF2H2_ARATH General transcription factor IIH subunit 2; TrEMBL-Plants: tr|A0A1J7IMI8|A0A1J7IMI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0661700
GO terms
3
LotjaGi2g1v0132200.1
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A072VC04|A0A072VC04_MEDTR DNA repair helicase (Rad3); Found in the gene: LotjaGi2g1v0132200
GO terms
6
LotjaGi2g1v0132200.2
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200
GO terms
6
LotjaGi2g1v0132200.3
– DNA repair helicase; TAIR: AT1G03190.1 RAD3-like DNA-binding helicase protein; Swiss-Prot: sp|Q8W4M7|ERCC2_ARATH DNA repair helicase XPD; TrEMBL-Plants: tr|A0A0L9VKH8|A0A0L9VKH8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0132200
GO terms
6
LotjaGi2g1v0254400_LC.1
– CDK-activating kinase assembly factor; TAIR: AT4G30820.11 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|G7KI90|G7KI90_MEDTR CDK-activating kinase assembly factor MAT1, putative; Found in the gene: LotjaGi2g1v0254400_LC
GO terms
4
LotjaGi2g1v0254400_LC.2
– CDK-activating kinase assembly factor; TAIR: AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|I3S4Z7|I3S4Z7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0254400_LC
GO terms
4
LotjaGi2g1v0254400_LC.3
– CDK-activating kinase assembly factor; TAIR: AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|I3S4Z7|I3S4Z7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0254400_LC
GO terms
4
LotjaGi2g1v0254400_LC.4
– CDK-activating kinase assembly factor; TAIR: AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|I3S4Z7|I3S4Z7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0254400_LC
GO terms
4
LotjaGi2g1v0254400_LC.5
– CDK-activating kinase assembly factor; TAIR: AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|I3S4Z7|I3S4Z7_MEDTR Uncharacterized protein; Found in the gene: LotjaGi2g1v0254400_LC
GO terms
4
LotjaGi2g1v0271400.1
– CDK-activating kinase assembly factor; TAIR: AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-like protein; Swiss-Prot: sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1; TrEMBL-Plants: tr|C6SW25|C6SW25_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0271400
GO terms
4
LotjaGi2g1v0277900.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900
GO terms
4
LotjaGi3g1v0002300.1
– Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300
GO terms
4
LotjaGi3g1v0007500.1
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi3g1v0007500.2
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.2 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|G7II90|G7II90_MEDTR Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi3g1v0007500.3
– Formamidopyrimidine-DNA glycosylase; TAIR: AT1G52500.1 MUTM homolog-1; Swiss-Prot: sp|O80358|FPG_ARATH Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|A0A151SPP2|A0A151SPP2_CAJCA Formamidopyrimidine-DNA glycosylase; Found in the gene: LotjaGi3g1v0007500
GO terms
5
LotjaGi4g1v0055200.1
– Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|G7ZZ96|G7ZZ96_MEDTR General transcription factor IIH protein; Found in the gene: LotjaGi4g1v0055200
GO terms
3
LotjaGi4g1v0055200.2
– Transcription factor; TAIR: AT4G17020.3 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|A0A1J7GYK6|A0A1J7GYK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055200
GO terms
3
LotjaGi4g1v0055200.3
– Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|A0A1J7GYK6|A0A1J7GYK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055200
GO terms
3
LotjaGi4g1v0055200.4
– Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|A0A0R0J5X6|A0A0R0J5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055200
GO terms
3
LotjaGi4g1v0055200.5
– Transcription factor; TAIR: AT4G17020.1 transcription factor-like protein; Swiss-Prot: sp|Q680U9|TFB2_ARATH RNA polymerase II transcription factor B subunit 2; TrEMBL-Plants: tr|G7ZZ96|G7ZZ96_MEDTR General transcription factor IIH protein; Found in the gene: LotjaGi4g1v0055200
GO terms
3
LotjaGi4g1v0428600.1
– DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600
GO terms
3
LotjaGi4g1v0428600.2
– DNA repair helicase; TAIR: AT5G41370.1 DNA repair helicase XPB1-like protein; Swiss-Prot: sp|Q38861|XPB1_ARATH DNA repair helicase XPB1; TrEMBL-Plants: tr|V7CS33|V7CS33_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0428600
GO terms
3
LotjaGi5g1v0258200.2
– BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); TAIR: AT1G55750.1 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); Swiss-Prot: sp|Q3ECP0|TFB1A_ARATH Probable RNA polymerase II transcription factor B subunit 1-1; TrEMBL-Plants: tr|I1LCH7|I1LCH7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0258200
GO terms
3
LotjaGi5g1v0340800.1
– RAD23 UV excision repair family protein; TAIR: AT3G02540.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A0L9U0N9|A0A0L9U0N9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0340800
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0043161
Biological process Proteasome-mediated ubiquitin-dependent protein catabolic process 1 1.75