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Lj5g3v1697110.2

Overview

Field Value
Gene ID Lj5g3v1697110
Transcript ID Lj5g3v1697110.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1-like [Cicer arietinum] gi|502118052|ref|XP_004496077.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12856
1 582 582 4.00E-178
IPR027079
Gene3D
G3DSA:2.30.29.30
6 102 97 7.20E-04
IPR011993
SUPERFAMILY
SSF50729
7 103 97 1.19E-05
IPR011993
SMART
SM00751
102 160 59 0.38
IPR005607
ProSiteProfiles
PS50858
102 160 59 9.361
IPR005607
SUPERFAMILY
SSF140383
110 155 46 1.57E-11 –
ProSiteProfiles
PS50858
185 237 53 11.554
IPR005607
SMART
SM00751
185 237 53 2.20E-05
IPR005607
SUPERFAMILY
SSF140383
185 237 53 5.49E-07 –
Pfam
PF03909
187 239 53 3.20E-10
IPR005607
Coils
Coil
359 379 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000439
Cellular component Transcription factor TFIIH core complex The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.
Subterm of
GO:0006289
Biological process Nucleotide-excision repair A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj5g3v1697110.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1697110.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.