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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR027450
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.017s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0070239.1
n.a. Transport protein sec31 isoform 1 [Theobroma cacao] gi|508702955|gb|EOX94851.1| chr0 25566523 25571964 -
2 domain predictions
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Lj0g3v0324989.1
n.a. PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6-like [Glycine max] gi|356559947|ref|XP_003548257.1| chr0 169900726 169904539 -
3 domain predictions
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Lj1g3v5062440.1
n.a. PREDICTED: alpha-ketoglutarate-dependent dioxygenase AlkB homolog [Glycine max] gi|356573293|ref|XP_003554797.1| chr1 62151152 62155688 +
3 domain predictions
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Lj2g3v1573010.1
n.a. Alkylated DNA repair protein alkB-like protein [Medicago truncatula] gi|357484481|ref|XP_003612528.1| chr2 24992548 24998143 -
2 domain predictions
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Lj2g3v1573010.2
n.a. PREDICTED: alkylated DNA repair protein alkB homolog 8-like isoform X2 [Cicer arietinum] gi|502161954|ref|XP_004512340.1| chr2 24992548 24998143 -
3 domain predictions
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Lj2g3v3110980.1
n.a. PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera] gi|225437314|ref|XP_002263866.1| chr2 40247570 40250482 +
3 domain predictions
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Lj3g3v1404030.1
n.a. Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|357470119|ref|XP_003605344.1| chr3 17987186 17991116 -
3 domain predictions
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Lj3g3v1404030.2
n.a. Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|357470119|ref|XP_003605344.1| chr3 17987791 17991116 -
3 domain predictions
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Lj4g3v2407460.1
n.a. hydroxyproline-rich glycoprotein-like protein [Arabidopsis thaliana] gi|18394153|ref|NP_563957.1| chr4 33425729 33435882 -
2 domain predictions
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Lj4g3v2551490.1
n.a. Alkylated DNA repair protein alkB-like protein [Medicago truncatula] gi|357462995|ref|XP_003601779.1| chr4 34283615 34287441 +
3 domain predictions
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Lj5g3v0471350.1
n.a. PREDICTED: RNA demethylase ALKBH5-like [Cicer arietinum] gi|502125179|ref|XP_004498830.1| chr5 4623262 4627624 +
3 domain predictions
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Lj5g3v1696820.1
n.a. Transport protein sec31 isoform 1 [Theobroma cacao] gi|508702955|gb|EOX94851.1| chr5 24075860 24081335 -
2 domain predictions
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Lj6g3v1709510.1
n.a. PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 2-like [Cicer arietinum] gi|502079759|ref|XP_004486359.1| chr6 19399279 19400847 -
3 domain predictions
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Lj6g3v2273270.1
n.a. PREDICTED: RNA demethylase ALKBH5-like [Cicer arietinum] gi|502076939|ref|XP_004485500.1| chr6 26356198 26359084 -
3 domain predictions
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LotjaGi1g1v0038300.1
n.a. RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT4G02485.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q9UT12|YLW2_SCHPO Uncharacterized protein P8A3.02c; TrEMBL-Plants: tr|I1M6V8|I1M6V8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0038300 LjG1.1_chr1 5319954 5326481 +
2 domain predictions
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LotjaGi1g1v0799900.1
n.a. Alpha-ketoglutarate-dependent dioxygenase AlkB like; TAIR: AT3G14160.1 2-oxoglutarate-dependent dioxygenase family protein; Swiss-Prot: sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB; TrEMBL-Plants: tr|A0A0L9TEQ1|A0A0L9TEQ1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0799900 LjG1.1_chr1 137037820 137043664 -
2 domain predictions
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LotjaGi2g1v0165400.1
n.a. RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT4G20350.2 oxidoreductase; Swiss-Prot: sp|Q3KRA9|ALKB6_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6; TrEMBL-Plants: tr|I3SBA3|I3SBA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0165400 LjG1.1_chr2 57503930 57510043 +
2 domain predictions
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LotjaGi2g1v0351300.1
n.a. RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT1G31600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8; TrEMBL-Plants: tr|I1L5A9|I1L5A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351300 LjG1.1_chr2 82769653 82775600 -
2 domain predictions
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LotjaGi2g1v0351300.2
n.a. RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT1G31600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8; TrEMBL-Plants: tr|I1L5A9|I1L5A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351300 LjG1.1_chr2 82770005 82775792 -
2 domain predictions
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LotjaGi3g1v0203300.1
n.a. Alpha-ketoglutarate-dependent dioxygenase AlkB; TAIR: AT5G01780.2 2-oxoglutarate-dependent dioxygenase family protein; Swiss-Prot: sp|P05050|ALKB_ECOLI Alpha-ketoglutarate-dependent dioxygenase AlkB; TrEMBL-Plants: tr|A0A1J7IJV0|A0A1J7IJV0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203300 LjG1.1_chr3 29667139 29671438 -
2 domain predictions
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LotjaGi3g1v0203300.2
n.a. Alpha-ketoglutarate-dependent dioxygenase AlkB; TAIR: AT5G01780.5 2-oxoglutarate-dependent dioxygenase family protein; Swiss-Prot: sp|Q5EAC5|ZN410_BOVIN Zinc finger protein 410; TrEMBL-Plants: tr|A0A1J7IJV0|A0A1J7IJV0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203300 LjG1.1_chr3 29667275 29671409 -
2 domain predictions
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LotjaGi5g1v0049300.1
n.a. 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT2G17970.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5; TrEMBL-Plants: tr|A0A0R0GNF3|A0A0R0GNF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0049300 LjG1.1_chr5 8340939 8345071 +
2 domain predictions
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LotjaGi5g1v0049300.2
n.a. 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT2G17970.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5; TrEMBL-Plants: tr|A0A0R0GNF3|A0A0R0GNF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0049300 LjG1.1_chr5 8340947 8344960 +
2 domain predictions
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LotjaGi5g1v0049300.3
n.a. 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT2G17970.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q08BA6|ALKB5_DANRE RNA demethylase ALKBH5; TrEMBL-Plants: tr|A0A0R0GNF3|A0A0R0GNF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0049300 LjG1.1_chr5 8340947 8344960 +
2 domain predictions
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LotjaGi6g1v0097800.1
n.a. Alpha-ketoglutarate-dependent dioxygenase alkB; TAIR: AT1G11780.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein; Swiss-Prot: sp|Q9SA98|ALKBH_ARATH Alpha-ketoglutarate-dependent dioxygenase alkB; TrEMBL-Plants: tr|I3T319|I3T319_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0097800 LjG1.1_chr6 21222275 21226558 -
2 domain predictions
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LotjaGi6g1v0282200.1
n.a. Alpha-ketoglutarate-dependent dioxygenase alkB like 3; TAIR: AT2G22260.6 oxidoreductase, 2OG-Fe(II) oxygenase family protein; Swiss-Prot: sp|Q9SIE0|ALKB2_ARATH DNA oxidative demethylase ALKBH2; TrEMBL-Plants: tr|I1L044|I1L044_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0282200 LjG1.1_chr6 59858477 59860534 -
2 domain predictions
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LotjaGi6g1v0282200.2
n.a. Alpha-ketoglutarate-dependent dioxygenase alkB like 3; TAIR: AT2G22260.6 oxidoreductase, 2OG-Fe(II) oxygenase family protein; Swiss-Prot: sp|Q9SIE0|ALKB2_ARATH DNA oxidative demethylase ALKBH2; TrEMBL-Plants: tr|I1L044|I1L044_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0282200 LjG1.1_chr6 59858928 59860457 -
2 domain predictions
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LotjaGi6g1v0360100.1
n.a. 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT4G36090.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein; Swiss-Prot: sp|D3ZKD3|ALKB5_RAT RNA demethylase ALKBH5; TrEMBL-Plants: tr|A0A151T7Y1|A0A151T7Y1_CAJCA Alkylated DNA repair protein alkB isogeny 5; Found in the gene: LotjaGi6g1v0360100 LjG1.1_chr6 67155143 67158472 -
2 domain predictions
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LotjaGi6g1v0360100.2
n.a. 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT4G36090.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein; Swiss-Prot: sp|Q3TSG4|ALKB5_MOUSE RNA demethylase ALKBH5; TrEMBL-Plants: tr|A0A151T7Y1|A0A151T7Y1_CAJCA Alkylated DNA repair protein alkB isogeny 5; Found in the gene: LotjaGi6g1v0360100 LjG1.1_chr6 67155842 67158350 -
2 domain predictions
 –