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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0351300 |
| Transcript ID | LotjaGi2g1v0351300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT1G31600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8; TrEMBL-Plants: tr|I1L5A9|I1L5A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82770005..82775792) extracted from Lotus japonicus Gifu genome v1.2.
AAGACCAAACCAAAAGGCATATTCATCAATTACAATCTCAACCACCACCACAATTACAAACCAAACATTTCAACCCAACA ATTCGTTAGGCAAGTCCTCCAAGACGGCCACGACACCGATCATGTTATTTTAACTGTAACTAAAGAATCCGAACTTTTAA CTCTCGGACTAGTCCAGAACATCAACCTCTAGACTGGTATGGAGGTTTAAGTCCCGGAGGGTAGTCCCGGCATTTTTTTA AAAAGGCTAGGGTGGCAATTCTAAAACAGGGGTGGGAAATCTAATTCCCTTCAATTAGTTAAACCAATTAGTTAAATCGA AACTTGATTTCAATCCTCAACAGTGAAAGGACGTGTTCATATGAATTCAATCTAGTCTCATAGTGGGTTGAAGTTGAACC AATTCACACAGATGGGTTTACCAAGGTTCGGTCGTCCCAAGAACGACGACGAATCGAGCTCAAACCTCTTCGTCGCCAAT TGCGGCCCAGCGGTGGGGCATTCCGATCACGAAATTGCTTCTGTGTTCTCCAAATTCGGCGAGTTGAACGGAGTTTATGC CGCAGATGACAGCGGCACGCGTGTCATTGTGTCGTTTTCCGATCAGGGTTCTGCTCAATCTGCATTGAAGGCATTGCATG GACAACCATGTCATGAACTTGGTGGTCGAACCTTGCATATTCGTTATTCTGTGCTTCAGCCAAATCATCAGGTACTGGTG TAAATGGGTTCGTGTTTTTGGCCCCGTTTCGAAAAACAGCTTAATTAAGCGCGCTTATTCATAAAAAATTTATTGAAATA AATTGAAAATAAGCTATATATAAGCATCAGCTATACTCATGAGTAGCTTATAAAAATAAAATAAGCTGTTTGCATAAGCT CTCTCAAACACTTATACAAGCGCTTATGATATCAGATAAGCTCTTCCAAACGGGCCTTTATCATGTTTATGGTTATTTAC TCATGAGTTTACATTGTTTGTTTAGGATCATGTTAAGGATTTGGTTCCTGTGTCTATCACTGCTTCTGATCTGAATATTC CAGGTGTTTACCTTGTGCATGACTTCATTACTGCTCAAGAAGAAGAGGTTTTCATGTTTGCATTTTTCTTGCATTCCTCT GTTTCAAATGAATATTTAGTTATTTACCTGTTTTTGAACTTCATTATATAATGTTGGCAATGACATGGTTCATCTTTTTC AGGAATTGCTTCAAGCTGTTGACTGTAGGCCTTGGAATAGCCTCGCAAAAAGAAGGGTGCAACACTATGGTTATGAGTTT CGTTACGACGTAAGTTTCAATGATTATTGGGGTTTTCGCAAATCGCAATATTCGTGGGTTTCTTTCAGTTGTGCCTAAAT TAATGGGAAGTCCAACCTTTTTCGAAATGACTCTTTAAATGCAACTGGCAATCTTAATGATAACAAATAGGTTGCTGAGT AATGTGATAATATTGATTAATCCAGACTCTCATTTCTACTTTATTTGGCTGTGTAGACTAGGAATGTTAATACCAAGCAT CGCTTAGGAGAGCTTCCATCATTTGTTTCTCCGGTACTTGAAAGAATTTCATCGTGTCCGACTTTCAAGAATACTGATGA TAGTATAGTTTTGGACCAACTTACGGTATGCTCAGTTGCTCACTTGCTGCTGTACTTCAAATTTCAATCGAATAAGGAAT TTTTTTTGTGATTTTGTATTAGTACTTGAGCACCCTCTGATACTGTCTGATACTTTCAGTTTCAGATGTAAGCATTGTTT ATTTATGTTTGTTGTTTTGAGTTTGAATGTTGCTATGTTATAGGTAAATGAGTACCCACCTGGAGTGGGTTTGTCCCCTC ATATAGACACCCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATAATGGAGTTTAGAAAA TATGAAAATGGTGGTTGGTTTTCTAGAGATGGCTCAAGTACTGTCACAAAAGTTGAAAGTCCTGAAGATGATTCGAATTT TATAAGGAGGGTTATCTATCTTCCCCCTCGATCTTTGCTACTCTTGTCTGGAGAAGCACGTTATGCATGGCATCATTACA TTCCACACCACAAGGTTAATGTTTTAGAAATGGTTATGGTCCCCCCCCCCCCCCCCCCACACACACACACACGCTGAAAG TAATTTTTACATTTCAGGTCCTATTTTGCTATTGTGGTCTTACAGTTGTTTTTCATCATTTTAAGATTTTACTTAAGAAT AACAACGCTGTTAAAATCTTATAAACTAAAAAGCATTAGAGTGCAGGAGAAAAATCTTCTTTTTGTTCATGAGCTTGCTG ATTTTTTTATATAAAATTGGCAAAATAAACCATTTTTCTGGAAGATAAAGTTCTGTATCTAAGATATGAAGATTCATTAT ATGCTTTCTGTTTCTTTTTCTTTTTCTGTTATAAGACAGTTTGTATTTCTTTATGCTGCCTTGCACATTGAGCACTTCAA GTGTCATTGCTTGATTTTAATTAGGGTACATTTTAAATCCAAAGCATGTCTATGTGATGGACTTATAATCTTGTTCAAGT TAAGATATTTGCTACAACATTTAATCCCATCAGTTTGTAGCTCTATTGATTTGTTCTGTGATAAGGAAGCTTGCTGTTCT AATTTCCAACATTTTAATGAGAAATTTAGTGTATTCAATTATTAGCAGAAATCTCAGGTTGTATTGACATATGTTTGCAC CTAAATATATTTTCTCCACCTACAGATAGACAAGGTGAATGGAAGAGTCATCAGAAGGGCTTCAAGAAGGGTATCTTTCA CATTTCGTAAGGTGTGTGAATGTCATGGTTTTTTATGCTGGTCTGCCTATAGAAACCATATTAAACCCCTTCATATATTT ATTTTTAGTGATTCAGTATCTAGTTGTTCAGCCCAACTGAAAATAAAATAAAATATTAGCATTATCATCAGTGTAGGTTG TTTCAGTAGCTGCTGCATCTGCTTTCATGACTCATGAACTCTATTTGATATTATGGCTTTTCATACCATATGTACTTTTC AGTCTACTTAAATTTTGTTTTCTTCTATTTTAGTTAATATTAGCAGTTGATATATGTAAACTGCAACAGTCCAGTACAAT ATCCTTTAAATCCAATAATTTTGAAAAATGGAAACATCCGATTTACAAACTCCTTTAGAACAAGTAATATGCTCAAGTGT TCATCTACTGATTTGTGAATGTACCAACTAACTTAAAAGCATAATTATTGTGTGACATCACATGAATTGTTTTATTGGTC TAACATGTTCCTAAGCTATACCCTTTATGAATGGCAAGCTCAACCGTGCATTTTGTTAAATTCTCTGTGATTTTTTGCTG TTCTGGTTTTTGTCTCCTATGGAGAATAAGCTGCTGGTTTATGGGTGATGCTGATTTGTTGATAGGTTGCTGGTTTTTTT ACAGTCTTTCACTGGTGGATATCAAGTCTTGTTTCGGCTGGAATATTACTAGCATAGCTTTCTATATTTTTTGACATTTA GTAGTGCTGTAGCTTGTTGTACACTTGTACCATCTGTTTTGGTTGGTGCACAGCCTCCTTGTGAGCTTTAGTGCGTTTCA CTGTTCTTTTTTCCTAGTTAGCTTTTGGATAATTTTCTGTTTCTTCTCTTTGTAAATGGTTGGAGTACCCATAGTACTCC CTTTCTATATCAATTTTGGCTTATCTAAAAAAAAACATGTTCCTAAGCTAGAGTCGTTTGTGCTGGAACGTTGACAATGC ATAGACTCACTTACCTTATCATGAACTTCAATGTTTTATTTACAATAAGGATCTAACGCTAAAGTCAATAGAGACTGTGG TTCAGTGGTTCCATTTTGAGAGAGTGAAAAGAAAAGCATAATTTGAAAACCGTGTTTGGACTTTCAACTACACCAGAATC AATTTTATAGTGTGTAATAAATATAAAGATATAACTTCCCTAGTTACTATATTTTCATGAATCATGATATAATGAACCTA GACTTTTGCACAATAATATACATTTCTGACTGTTGAAATCTTAAGAGATGTCACTGTCAGTGACTGCAATCTGCAATTAT TCACTTATAGTATTAATTAATAAAGAATTGTTTGTTCCAAGAAGTTTCTTTGCTGTGTAAAATTTCTCATGTTAAAATAA CTTCTTGTGTGTACCAGGTTAGGGAAGGTTTATGCAAATGTGAATTCCCTCAGTATTGTGACTCTCAAAGATGAGTTTTC TCCAAGATGGCAATGAGAAGGTTTGAAAACACACCAAATATCTCTGTTCTTGAGAGTTTCAATGAGCATAACCTGAGGTG TGTTCTGCTTTTATTAGTTGTTTCTTGATACTATAGTGCCGTATTTTATAATGGTGTGTGTTTGCTGTTGAGTATTAGAT TAGGAAGCTTTAAATTGATAGTTTTAGACTTTACAGTGGTTTTTATCCTCTATAGCCGATTAAATAATCAACCATTTCTC CACAACCACATCTTTAGCTTCCAAATAGTTCTGTTCTCATAATCCTGTTCTCTTTCAACTTCCAAGGTTCCTTTATTTCT ATTTCTATACAAATCGGAATTGGAATTTGGCTCTAGATACTATTCGAACTCATCCTAGCTATTAGCTTGAGCAGCAGGAC AGTGGATTGGGTGGTTCAGTGGTTGACTGAAGGGGATACAAAATTGAAATAAACTCCCTTCACGGCTTCACCTCATTATA TTTTTAGGATTATATCAATGTGTTAAAAATCCAGAAAAATCTTCTATTAAATTTAATTTTAATGGAAAACAATTGAGGAT CATTTTACAATTTTAGAAACTTTGATTATCCATGAGTCTCTCTGACACTCCTGCCCAGTGTGCAAAATTGTTCATGACAG TCAAGTTTCTCATTTTAATCATACACCGCCAGTATACAGTGGGAACCTGCACGTTGGCATCCTTTAAAGCCTCAATTTAT TAATTTAGAGAGCAGGATAAGATTTCCAGTACATGGGTCATGCTAAAAAGGTCGACATTAAAATGAGACTTATAAGTTTT AATTGTTGGCAAATTGGAAATTGTTATAATCTTCAACCTCAATTTGGTTTTGACACTATGGTTTTGAGCACATGGATATT GTCGGTAATATTAGTATTCAAAATTATGATGACATTGATAGATTACATACAGACACTGATAAAAGTTTTATATTAAATAT GCAAGTGTTGGTTTATGTTATCCTTTTTCTGTTTCAATTTCATGGAATTCATGCAATCCCTTTCTTCACACTGTTCTCCA ATGTGAGCTTTAGTGATTTTTAAAGATTATGCAGTGAGTGAATTAGAAAATAATAACAGACATTTATAATACACTTTTAC ATTATGCAGGGTTCTAACTAGCTTTACATGCATGTCTTGAAGGTTTGGTGGATTCTTCAATAAGATCGTTGGACAATGTT GTCGCCTGTAACAAAAGAAAATTTGAACTGGAAATGCTTAATGAGATCAATCAAGATTTCATGTTGGCAGCCCAAATAAC ATGAAATTGGTCCCAGGTTAACTTTGAAGTGATTTGAACTCTAAAAGTAGTTGGGGAGCTCTAGCTTTGTGGCTTTATGG ATACTCTGCAGTTCTCTTATCTCGGAAATTATACCAATCCTATTTATATTTTTTGGTATGTAACAGTTTAGTTTTTTAGT TTGTTTTCTATGTGTCGTTCAATTTGACGAAATAAGCAACTACAATGACAGGGGCAAAGTGAACGTTATCATCAAATATT ATGAAGCAATGTTATAAATTATAGTAAT
CDS sequence (LotjaGi2g1v0351300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTACCAAGGTTCGGTCGTCCCAAGAACGACGACGAATCGAGCTCAAACCTCTTCGTCGCCAATTGCGGCCCAGC GGTGGGGCATTCCGATCACGAAATTGCTTCTGTGTTCTCCAAATTCGGCGAGTTGAACGGAGTTTATGCCGCAGATGACA GCGGCACGCGTGTCATTGTGTCGTTTTCCGATCAGGGTTCTGCTCAATCTGCATTGAAGGCATTGCATGGACAACCATGT CATGAACTTGGTGGTCGAACCTTGCATATTCGTTATTCTGTGCTTCAGCCAAATCATCAGGATCATGTTAAGGATTTGGT TCCTGTGTCTATCACTGCTTCTGATCTGAATATTCCAGGTGTTTACCTTGTGCATGACTTCATTACTGCTCAAGAAGAAG AGGAATTGCTTCAAGCTGTTGACTGTAGGCCTTGGAATAGCCTCGCAAAAAGAAGGGTGCAACACTATGGTTATGAGTTT CGTTACGACACTAGGAATGTTAATACCAAGCATCGCTTAGGAGAGCTTCCATCATTTGTTTCTCCGGTACTTGAAAGAAT TTCATCGTGTCCGACTTTCAAGAATACTGATGATAGTATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAG TGGGTTTGTCCCCTCATATAGACACCCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATA ATGGAGTTTAGAAAATATGAAAATGGTGGTTGGTTTTCTAGAGATGGCTCAAGTACTGTCACAAAAGTTGAAAGTCCTGA AGATGATTCGAATTTTATAAGGAGGGTTATCTATCTTCCCCCTCGATCTTTGCTACTCTTGTCTGGAGAAGCACGTTATG CATGGCATCATTACATTCCACACCACAAGATAGACAAGGTGAATGGAAGAGTCATCAGAAGGGCTTCAAGAAGGGTATCT TTCACATTTCGTAAGGTTAGGGAAGGTTTATGCAAATGTGAATTCCCTCAGTATTGTGACTCTCAAAGATGA
Protein sequence (LotjaGi2g1v0351300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLPRFGRPKNDDESSSNLFVANCGPAVGHSDHEIASVFSKFGELNGVYAADDSGTRVIVSFSDQGSAQSALKALHGQPC HELGGRTLHIRYSVLQPNHQDHVKDLVPVSITASDLNIPGVYLVHDFITAQEEEELLQAVDCRPWNSLAKRRVQHYGYEF RYDTRNVNTKHRLGELPSFVSPVLERISSCPTFKNTDDSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCI MEFRKYENGGWFSRDGSSTVTKVESPEDDSNFIRRVIYLPPRSLLLLSGEARYAWHHYIPHHKIDKVNGRVIRRASRRVS FTFRKVREGLCKCEFPQYCDSQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 103 | 99 | 3.7E-11 | ||
| SUPERFAMILY | 9 | 100 | 92 | 3.64E-12 | ||
| ProSiteProfiles | 17 | 95 | 79 | 11.349 | ||
| SMART | 18 | 91 | 74 | 3.1E-5 | ||
| PANTHER | 31 | 342 | 312 | 2.5E-104 | – | |
| PANTHER | 31 | 342 | 312 | 2.5E-104 | – | |
| Gene3D | 104 | 330 | 227 | 6.7E-54 | ||
| SUPERFAMILY | 118 | 327 | 210 | 5.08E-35 | – | |
| Pfam | 154 | 324 | 171 | 2.7E-16 | ||
| ProSiteProfiles | 201 | 327 | 127 | 9.856 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0351300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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