Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0351300 |
| Transcript ID | LotjaGi2g1v0351300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding (RRM/RBD/RNP motifs) family protein; TAIR: AT1G31600.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8; TrEMBL-Plants: tr|I1L5A9|I1L5A9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0351300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:82769653..82775600) extracted from Lotus japonicus Gifu genome v1.2.
ACTGGTATGGAGGTTTAAGTCCCGGAGGGTAGTCCCGGCATTTTTTTAAAAAGGCTAGGGTGGCAATTCTAAAACAGGGG TGGGAAATCTAATTCCCTTCAATTAGTTAAACCAATTAGTTAAATCGAAACTTGATTTCAATCCTCAACAGTGAAAGGAC GTGTTCATATGAATTCAATCTAGTCTCATAGTGGGTTGAAGTTGAACCAATTCACACAGATGGGTTTACCAAGGTTCGGT CGTCCCAAGAACGACGACGAATCGAGCTCAAACCTCTTCGTCGCCAATTGCGGCCCAGCGGTGGGGCATTCCGATCACGA AATTGCTTCTGTGTTCTCCAAATTCGGCGAGTTGAACGGAGTTTATGCCGCAGATGACAGCGGCACGCGTGTCATTGTGT CGTTTTCCGATCAGGGTTCTGCTCAATCTGCATTGAAGGCATTGCATGGACAACCATGTCATGAACTTGGTGGTCGAACC TTGCATATTCGTTATTCTGTGCTTCAGCCAAATCATCAGGTACTGGTGTAAATGGGTTCGTGTTTTTGGCCCCGTTTCGA AAAACAGCTTAATTAAGCGCGCTTATTCATAAAAAATTTATTGAAATAAATTGAAAATAAGCTATATATAAGCATCAGCT ATACTCATGAGTAGCTTATAAAAATAAAATAAGCTGTTTGCATAAGCTCTCTCAAACACTTATACAAGCGCTTATGATAT CAGATAAGCTCTTCCAAACGGGCCTTTATCATGTTTATGGTTATTTACTCATGAGTTTACATTGTTTGTTTAGGATCATG TTAAGGATTTGGTTCCTGTGTCTATCACTGCTTCTGATCTGAATATTCCAGGTGTTTACCTTGTGCATGACTTCATTACT GCTCAAGAAGAAGAGGTTTTCATGTTTGCATTTTTCTTGCATTCCTCTGTTTCAAATGAATATTTAGTTATTTACCTGTT TTTGAACTTCATTATATAATGTTGGCAATGACATGGTTCATCTTTTTCAGGAATTGCTTCAAGCTGTTGACTGTAGGCCT TGGAATAGCCTCGCAAAAAGAAGGGTGCAACACTATGGTTATGAGTTTCGTTACGACGTAAGTTTCAATGATTATTGGGG TTTTCGCAAATCGCAATATTCGTGGGTTTCTTTCAGTTGTGCCTAAATTAATGGGAAGTCCAACCTTTTTCGAAATGACT CTTTAAATGCAACTGGCAATCTTAATGATAACAAATAGGTTGCTGAGTAATGTGATAATATTGATTAATCCAGACTCTCA TTTCTACTTTATTTGGCTGTGTAGACTAGGAATGTTAATACCAAGCATCGCTTAGGAGAGCTTCCATCATTTGTTTCTCC GGTACTTGAAAGAATTTCATCGTGTCCGACTTTCAAGAATACTGATGATAGTATAGTTTTGGACCAACTTACGGTATGCT CAGTTGCTCACTTGCTGCTGTACTTCAAATTTCAATCGAATAAGGAATTTTTTTTGTGATTTTGTATTAGTACTTGAGCA CCCTCTGATACTGTCTGATACTTTCAGTTTCAGATGTAAGCATTGTTTATTTATGTTTGTTGTTTTGAGTTTGAATGTTG CTATGTTATAGGTAAATGAGTACCCACCTGGAGTGGGTTTGTCCCCTCATATAGACACCCACTCTGCATTTGAAGATTTA ATTTTCAGCCTTTCATTATCAGGGCCTTGTATAATGGAGTTTAGAAAATATGAAAATGGTGGTTGGTTTTCTAGAGATGG CTCAAGTACTGTCACAAAAGTTGAAAGTCCTGAAGATGATTCGAATTTTATAAGGAGGGTTATCTATCTTCCCCCTCGAT CTTTGCTACTCTTGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACACCACAAGGTTAATGTTTTAGAAATG GTTATGGTCCCCCCCCCCCCCCCCCCACACACACACACACGCTGAAAGTAATTTTTACATTTCAGGTCCTATTTTGCTAT TGTGGTCTTACAGTTGTTTTTCATCATTTTAAGATTTTACTTAAGAATAACAACGCTGTTAAAATCTTATAAACTAAAAA GCATTAGAGTGCAGGAGAAAAATCTTCTTTTTGTTCATGAGCTTGCTGATTTTTTTATATAAAATTGGCAAAATAAACCA TTTTTCTGGAAGATAAAGTTCTGTATCTAAGATATGAAGATTCATTATATGCTTTCTGTTTCTTTTTCTTTTTCTGTTAT AAGACAGTTTGTATTTCTTTATGCTGCCTTGCACATTGAGCACTTCAAGTGTCATTGCTTGATTTTAATTAGGGTACATT TTAAATCCAAAGCATGTCTATGTGATGGACTTATAATCTTGTTCAAGTTAAGATATTTGCTACAACATTTAATCCCATCA GTTTGTAGCTCTATTGATTTGTTCTGTGATAAGGAAGCTTGCTGTTCTAATTTCCAACATTTTAATGAGAAATTTAGTGT ATTCAATTATTAGCAGAAATCTCAGGTTGTATTGACATATGTTTGCACCTAAATATATTTTCTCCACCTACAGATAGACA AGGTGAATGGAAGAGTCATCAGAAGGGCTTCAAGAAGGGTATCTTTCACATTTCGTAAGGTGTGTGAATGTCATGGTTTT TTATGCTGGTCTGCCTATAGAAACCATATTAAACCCCTTCATATATTTATTTTTAGTGATTCAGTATCTAGTTGTTCAGC CCAACTGAAAATAAAATAAAATATTAGCATTATCATCAGTGTAGGTTGTTTCAGTAGCTGCTGCATCTGCTTTCATGACT CATGAACTCTATTTGATATTATGGCTTTTCATACCATATGTACTTTTCAGTCTACTTAAATTTTGTTTTCTTCTATTTTA GTTAATATTAGCAGTTGATATATGTAAACTGCAACAGTCCAGTACAATATCCTTTAAATCCAATAATTTTGAAAAATGGA AACATCCGATTTACAAACTCCTTTAGAACAAGTAATATGCTCAAGTGTTCATCTACTGATTTGTGAATGTACCAACTAAC TTAAAAGCATAATTATTGTGTGACATCACATGAATTGTTTTATTGGTCTAACATGTTCCTAAGCTATACCCTTTATGAAT GGCAAGCTCAACCGTGCATTTTGTTAAATTCTCTGTGATTTTTTGCTGTTCTGGTTTTTGTCTCCTATGGAGAATAAGCT GCTGGTTTATGGGTGATGCTGATTTGTTGATAGGTTGCTGGTTTTTTTACAGTCTTTCACTGGTGGATATCAAGTCTTGT TTCGGCTGGAATATTACTAGCATAGCTTTCTATATTTTTTGACATTTAGTAGTGCTGTAGCTTGTTGTACACTTGTACCA TCTGTTTTGGTTGGTGCACAGCCTCCTTGTGAGCTTTAGTGCGTTTCACTGTTCTTTTTTCCTAGTTAGCTTTTGGATAA TTTTCTGTTTCTTCTCTTTGTAAATGGTTGGAGTACCCATAGTACTCCCTTTCTATATCAATTTTGGCTTATCTAAAAAA AAACATGTTCCTAAGCTAGAGTCGTTTGTGCTGGAACGTTGACAATGCATAGACTCACTTACCTTATCATGAACTTCAAT GTTTTATTTACAATAAGGATCTAACGCTAAAGTCAATAGAGACTGTGGTTCAGTGGTTCCATTTTGAGAGAGTGAAAAGA AAAGCATAATTTGAAAACCGTGTTTGGACTTTCAACTACACCAGAATCAATTTTATAGTGTGTAATAAATATAAAGATAT AACTTCCCTAGTTACTATATTTTCATGAATCATGATATAATGAACCTAGACTTTTGCACAATAATATACATTTCTGACTG TTGAAATCTTAAGAGATGTCACTGTCAGTGACTGCAATCTGCAATTATTCACTTATAGTATTAATTAATAAAGAATTGTT TGTTCCAAGAAGTTTCTTTGCTGTGTAAAATTTCTCATGTTAAAATAACTTCTTGTGTGTACCAGGTTAGGGAAGGTTTA TGCAAATGTGAATTCCCTCAGTATTGTGACTCTCAAAGATGAGTTTTCTCCAAGATGGCAATGAGAAGGTTTGAAAACAC ACCAAATATCTCTGTTCTTGAGAGTTTCAATGAGCATAACCTGAGGTGTGTTCTGCTTTTATTAGTTGTTTCTTGATACT ATAGTGCCGTATTTTATAATGGTGTGTGTTTGCTGTTGAGTATTAGATTAGGAAGCTTTAAATTGATAGTTTTAGACTTT ACAGTGGTTTTTATCCTCTATAGCCGATTAAATAATCAACCATTTCTCCACAACCACATCTTTAGCTTCCAAATAGTTCT GTTCTCATAATCCTGTTCTCTTTCAACTTCCAAGGTTCCTTTATTTCTATTTCTATACAAATCGGAATTGGAATTTGGCT CTAGATACTATTCGAACTCATCCTAGCTATTAGCTTGAGCAGCAGGACAGTGGATTGGGTGGTTCAGTGGTTGACTGAAG GGGATACAAAATTGAAATAAACTCCCTTCACGGCTTCACCTCATTATATTTTTAGGATTATATCAATGTGTTAAAAATCC AGAAAAATCTTCTATTAAATTTAATTTTAATGGAAAACAATTGAGGATCATTTTACAATTTTAGAAACTTTGATTATCCA TGAGTCTCTCTGACACTCCTGCCCAGTGTGCAAAATTGTTCATGACAGTCAAGTTTCTCATTTTAATCATACACCGCCAG TATACAGTGGGAACCTGCACGTTGGCATCCTTTAAAGCCTCAATTTATTAATTTAGAGAGCAGGATAAGATTTCCAGTAC ATGGGTCATGCTAAAAAGGTCGACATTAAAATGAGACTTATAAGTTTTAATTGTTGGCAAATTGGAAATTGTTATAATCT TCAACCTCAATTTGGTTTTGACACTATGGTTTTGAGCACATGGATATTGTCGGTAATATTAGTATTCAAAATTATGATGA CATTGATAGATTACATACAGACACTGATAAAAGTTTTATATTAAATATGCAAGTGTTGGTTTATGTTATCCTTTTTCTGT TTCAATTTCATGGAATTCATGCAATCCCTTTCTTCACACTGTTCTCCAATGTGAGCTTTAGTGATTTTTAAAGATTATGC AGTGAGTGAATTAGAAAATAATAACAGACATTTATAATACACTTTTACATTATGCAGGGTTCTAACTAGCTTTACATGCA TGTCTTGAAGGTTTGGTGGATTCTTCAATAAGATCGTTGGACAATGTTGTCGCCTGTAACAAAAGAAAATTTGAACTGGA AATGCTTAATGAGATCAATCAAGATTTCATGTTGGCAGCCCAAATAACATGAAATTGGTCCCAGGTTAACTTTGAAGTGA TTTGAACTCTAAAAGTAGTTGGGGAGCTCTAGCTTTGTGGCTTTATGGATACTCTGCAGTTCTCTTATCTCGGAAATTAT ACCAATCCTATTTATATTTTTTGGTATGTAACAGTTTAGTTTTTTAGTTTGTTTTCTATGTGTCGTTCAATTTGACGAAA TAAGCAACTACAATGACAGGGGCAAAGTGAACGTTATCATCAAATATTATGAAGCAATGTTATAAATTATAGTAATTTGA GAATAAAATGTAACTTTTGTGAGTATTATTATTTGGTAACATCATCTAAAATAGTTTGAAATTTAGTGAGGGATGATCAT GATAGGATATAAATAATAGGATGAAGATAACATCGTGTTAGAGAGGGGAAACACATCACATGCATTTAATGTTAATCCAC TCTATTTGTATCATGGTGATAGTAAAAATCGAAAACATAAAATGAGTGAAAGTTATGCTTATGTGGCTGCCACATAGCAA AATAAAAGTCAGTGTAAGAGATTATGGTTTGGTCATACAAGGCTTGCCTCGACTAATTTATCTGTTTTTTTTTATTATAA AATTTCTACTCGCAAAGACATCTTCAGG
CDS sequence (LotjaGi2g1v0351300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTACCAAGGTTCGGTCGTCCCAAGAACGACGACGAATCGAGCTCAAACCTCTTCGTCGCCAATTGCGGCCCAGC GGTGGGGCATTCCGATCACGAAATTGCTTCTGTGTTCTCCAAATTCGGCGAGTTGAACGGAGTTTATGCCGCAGATGACA GCGGCACGCGTGTCATTGTGTCGTTTTCCGATCAGGGTTCTGCTCAATCTGCATTGAAGGCATTGCATGGACAACCATGT CATGAACTTGGTGGTCGAACCTTGCATATTCGTTATTCTGTGCTTCAGCCAAATCATCAGGATCATGTTAAGGATTTGGT TCCTGTGTCTATCACTGCTTCTGATCTGAATATTCCAGGTGTTTACCTTGTGCATGACTTCATTACTGCTCAAGAAGAAG AGGAATTGCTTCAAGCTGTTGACTGTAGGCCTTGGAATAGCCTCGCAAAAAGAAGGGTGCAACACTATGGTTATGAGTTT CGTTACGACACTAGGAATGTTAATACCAAGCATCGCTTAGGAGAGCTTCCATCATTTGTTTCTCCGGTACTTGAAAGAAT TTCATCGTGTCCGACTTTCAAGAATACTGATGATAGTATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGAG TGGGTTTGTCCCCTCATATAGACACCCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATA ATGGAGTTTAGAAAATATGAAAATGGTGGTTGGTTTTCTAGAGATGGCTCAAGTACTGTCACAAAAGTTGAAAGTCCTGA AGATGATTCGAATTTTATAAGGAGGGTTATCTATCTTCCCCCTCGATCTTTGCTACTCTTGTCTGGAGAAGCACGTTATG CATGGCATCATTACATTCCACACCACAAGATAGACAAGGTGAATGGAAGAGTCATCAGAAGGGCTTCAAGAAGGGTATCT TTCACATTTCGTAAGGTTAGGGAAGGTTTATGCAAATGTGAATTCCCTCAGTATTGTGACTCTCAAAGATGA
Protein sequence (LotjaGi2g1v0351300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLPRFGRPKNDDESSSNLFVANCGPAVGHSDHEIASVFSKFGELNGVYAADDSGTRVIVSFSDQGSAQSALKALHGQPC HELGGRTLHIRYSVLQPNHQDHVKDLVPVSITASDLNIPGVYLVHDFITAQEEEELLQAVDCRPWNSLAKRRVQHYGYEF RYDTRNVNTKHRLGELPSFVSPVLERISSCPTFKNTDDSIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCI MEFRKYENGGWFSRDGSSTVTKVESPEDDSNFIRRVIYLPPRSLLLLSGEARYAWHHYIPHHKIDKVNGRVIRRASRRVS FTFRKVREGLCKCEFPQYCDSQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 103 | 99 | 3.7E-11 | ||
| SUPERFAMILY | 9 | 100 | 92 | 3.64E-12 | ||
| ProSiteProfiles | 17 | 95 | 79 | 11.349 | ||
| SMART | 18 | 91 | 74 | 3.1E-5 | ||
| PANTHER | 31 | 342 | 312 | 2.5E-104 | – | |
| PANTHER | 31 | 342 | 312 | 2.5E-104 | – | |
| Gene3D | 104 | 330 | 227 | 6.7E-54 | ||
| SUPERFAMILY | 118 | 327 | 210 | 5.08E-35 | – | |
| Pfam | 154 | 324 | 171 | 2.7E-16 | ||
| ProSiteProfiles | 201 | 327 | 127 | 9.856 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0351300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…