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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR028942
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.248s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050159.1
n.a. Nucleosome/chromatin assembly factor group [Medicago truncatula] gi|357520229|ref|XP_003630403.1| chr0 17012609 17018860 -
2 domain predictions
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Lj0g3v0080979.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 31524981 31526553 +
2 domain predictions
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Lj0g3v0080979.2
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 31524981 31527898 +
2 domain predictions
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Lj0g3v0211729.1
n.a. DDT; Homeodomain-related [Medicago truncatula] gi|124360728|gb|ABN08705.1| chr0 106698283 106707217 -
2 domain predictions
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Lj0g3v0248929.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 129011374 129015539 -
2 domain predictions
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Lj0g3v0251549.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 130485606 130493549 +
2 domain predictions
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Lj0g3v0357629.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 188304496 188307880 -
2 domain predictions
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Lj0g3v0357629.2
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr0 188304496 188307880 -
2 domain predictions
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Lj1g3v1943860.2
n.a. Zinc finger FYVE domain-containing protein 26 isoform 1 [Theobroma cacao] gi|508782383|gb|EOY29639.1| chr1 23152431 23154938 +
2 domain predictions
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Lj1g3v4794010.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr1 57801845 57820485 -
2 domain predictions
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Lj2g3v1014400.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| chr2 15598802 15614731 -
2 domain predictions
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Lj3g3v1059130.1
n.a. zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| chr3 14114759 14118743 +
2 domain predictions
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Lj3g3v1128960.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| chr3 15174192 15184760 -
2 domain predictions
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Lj3g3v3016640.1
n.a. Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| chr3 37709742 37720386 +
2 domain predictions
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Lj3g3v3579340.1
n.a. Chromodomain helicase DNA binding protein [Medicago truncatula] gi|357474041|ref|XP_003607305.1| chr3 43445330 43464444 +
2 domain predictions
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Lj4g3v0473640.1
n.a. DDT; Homeodomain-related [Medicago truncatula] gi|124360728|gb|ABN08705.1| chr4 7467592 7474076 -
2 domain predictions
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Lj4g3v1599320.2
n.a. PREDICTED: chromatin modification-related protein EAF7-like [Cicer arietinum] gi|502152172|ref|XP_004508799.1| chr4 23532582 23536826 -
2 domain predictions
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Lj4g3v2846370.1
n.a. PREDICTED: DDT domain-containing protein DDB_G0282237-like [Cicer arietinum] gi|502139715|ref|XP_004503869.1| chr4 38150700 38155930 +
2 domain predictions
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Lj4g3v3015070.1
n.a. Homeodomain-like transcriptional regulator isoform 2 [Theobroma cacao] gi|508701749|gb|EOX93645.1| chr4 40320162 40335478 +
2 domain predictions
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Lj6g3v0352750.2
n.a. PREDICTED: chromatin modification-related protein EAF7-like [Cicer arietinum] gi|502152172|ref|XP_004508799.1| chr6 3337766 3343697 -
2 domain predictions
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LotjaGi1g1v0186700.1
n.a. DDT domain-containing protein; TAIR: AT1G18950.3 DDT domain superfamily; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|I1JX04|I1JX04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0186700 LjG1.1_chr1 36538118 36553980 -
2 domain predictions
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LotjaGi1g1v0524300.1
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0524300 LjG1.1_chr1 104935645 104942108 -
2 domain predictions
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LotjaGi1g1v0524300.2
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0524300 LjG1.1_chr1 104936135 104942060 -
2 domain predictions
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LotjaGi1g1v0749700.1
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 LjG1.1_chr1 132211253 132217358 +
2 domain predictions
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LotjaGi1g1v0749700.2
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 LjG1.1_chr1 132211253 132225552 +
2 domain predictions
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LotjaGi1g1v0749700.3
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1 protein; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 LjG1.1_chr1 132219127 132225552 +
2 domain predictions
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LotjaGi2g1v0054100.1
n.a. Zinc-finger domain of monoamine-oxidase A repressor R1 protein; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi2g1v0054100 LjG1.1_chr2 10700552 10708465 +
2 domain predictions
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LotjaGi2g1v0248100.1
n.a. Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100 LjG1.1_chr2 71364106 71383994 -
2 domain predictions
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LotjaGi3g1v0242000.1
n.a. Homeobox protein, putative; TAIR: AT5G44180.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|Q9FFH1|RLT2_ARATH Homeobox-DDT domain protein RLT2; TrEMBL-Plants: tr|K7KY04|K7KY04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242000 LjG1.1_chr3 39299170 39319091 -
2 domain predictions
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LotjaGi3g1v0481400.1
n.a. Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A1J7GFU1|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400 LjG1.1_chr3 89906343 89917116 +
2 domain predictions
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LotjaGi4g1v0061500.1
n.a. Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0B2PKP8|A0A0B2PKP8_GLYSO Homeobox protein 10; Found in the gene: LotjaGi4g1v0061500 LjG1.1_chr4 7462080 7473349 -
2 domain predictions
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LotjaGi4g1v0244200.1
n.a. DDT domain-containing protein; TAIR: AT1G18950.2 DDT domain superfamily; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|A0A151SAB5|A0A151SAB5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0244200 LjG1.1_chr4 59573393 59582118 -
2 domain predictions
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LotjaGi4g1v0439900.1
n.a. Homeodomain-like transcriptional regulator; TAIR: AT4G12750.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|F4JRF5|RLT3_ARATH Homeobox-DDT domain protein RLT3; TrEMBL-Plants: tr|K7KRT9|K7KRT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439900 LjG1.1_chr4 81351396 81367453 +
2 domain predictions
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LotjaGi6g1v0328200.1
n.a. Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 LjG1.1_chr6 64324517 64341249 +
2 domain predictions
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LotjaGi6g1v0328200.2
n.a. Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 LjG1.1_chr6 64325210 64336775 +
2 domain predictions
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