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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3016640 |
| Transcript ID | Lj3g3v3016640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | – | – | |
| PANTHER | 15 | 345 | 331 | 0 | – | |
| PANTHER | 15 | 345 | 331 | 0 | – | |
| MobiDBLite | 118 | 174 | 57 | – | – | |
| SMART | 199 | 259 | 61 | 4.00E-10 | ||
| ProSiteProfiles | 199 | 259 | 61 | 14.555 | ||
| Pfam | 201 | 256 | 56 | 2.10E-13 | ||
| Pfam | 303 | 346 | 44 | 7.50E-12 | ||
| PANTHER | 369 | 506 | 138 | 0 | – | |
| PANTHER | 369 | 506 | 138 | 0 | – | |
| MobiDBLite | 385 | 417 | 33 | – | – | |
| Gene3D | 410 | 471 | 62 | 1.70E-15 | ||
| SUPERFAMILY | 412 | 473 | 62 | 2.66E-15 | ||
| ProSiteProfiles | 423 | 470 | 48 | 9.873 | ||
| SMART | 425 | 468 | 44 | 1.20E-10 | ||
| Pfam | 426 | 468 | 43 | 8.00E-08 | ||
| CDD | 426 | 467 | 42 | 2.96E-14 | – | |
| ProSitePatterns | 426 | 467 | 42 | – | ||
| PANTHER | 734 | 1248 | 515 | 0 | – | |
| PANTHER | 734 | 1248 | 515 | 0 | – | |
| SMART | 1181 | 1229 | 49 | 3.5 | ||
| PANTHER | 1303 | 1497 | 195 | 0 | – | |
| PANTHER | 1303 | 1497 | 195 | 0 | – | |
| MobiDBLite | 1304 | 1359 | 56 | – | – | |
| SUPERFAMILY | 1393 | 1454 | 62 | 2.66E-10 | ||
| Gene3D | 1399 | 1449 | 51 | 5.10E-09 | ||
| CDD | 1400 | 1447 | 48 | 5.65E-05 | – | |
| SMART | 1400 | 1448 | 49 | 0.8 | ||
| MobiDBLite | 1466 | 1485 | 20 | – | – | |
| SUPERFAMILY | 1668 | 1722 | 55 | 6.64E-05 | ||
| SMART | 1676 | 1721 | 46 | 1.7 | ||
| CDD | 1676 | 1720 | 45 | 0.00229504 | – | |
| ProSitePatterns | 1677 | 1720 | 44 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v3016640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3016640.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.