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IPR028942 is a WHIM1 domain.
<p>WHIM1 is a conserved α helical motif that along with the WHIM2 and WHIM3 motifs, and the DDT domain comprise an α helical module found in diverse eukaryotic chromatin proteins [[cite:PUB00067481]].Based on the Ioc3 structure, this module is inferred to interact with nucleosomal linker DNA and the SLIDE domain of ISWI proteins [[cite:PUB00067481], [cite:PUB00069727]]. The resulting complex forms a protein ruler that measures out the spacing between two adjacent nucleosomes [[cite:PUB00069727]]. The conserved basic residue in WHIM1 is involved in packing with the DDT motif. The module shows a great domain architectural diversity and is often combined with other modified histone peptide recognizing and DNA binding domains, some of which discriminate methylated DNA [[cite:PUB00067481]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Nucleosome/chromatin assembly factor group [Medicago truncatula] gi|357520229|ref|XP_003630403.1| | 11 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 5 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 5 | ||
| – | DDT; Homeodomain-related [Medicago truncatula] gi|124360728|gb|ABN08705.1| | 7 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 4 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 11 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 7 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 7 | ||
| – | Zinc finger FYVE domain-containing protein 26 isoform 1 [Theobroma cacao] gi|508782383|gb|EOY29639.1| | 4 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 7 | ||
| – | PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| | 32 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein [Arabidopsis thaliana] gi|22327451|ref|NP_198685.2| | 5 | ||
| – | Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| | 22 | ||
| – | Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|357472039|ref|XP_003606304.1| | 22 | ||
| – | Chromodomain helicase DNA binding protein [Medicago truncatula] gi|357474041|ref|XP_003607305.1| | 21 | ||
| – | DDT; Homeodomain-related [Medicago truncatula] gi|124360728|gb|ABN08705.1| | 14 | ||
| – | PREDICTED: chromatin modification-related protein EAF7-like [Cicer arietinum] gi|502152172|ref|XP_004508799.1| | 6 | ||
| – | PREDICTED: DDT domain-containing protein DDB_G0282237-like [Cicer arietinum] gi|502139715|ref|XP_004503869.1| | 14 | ||
| – | Homeodomain-like transcriptional regulator isoform 2 [Theobroma cacao] gi|508701749|gb|EOX93645.1| | 12 | ||
| – | PREDICTED: chromatin modification-related protein EAF7-like [Cicer arietinum] gi|502152172|ref|XP_004508799.1| | 5 | ||
| – | DDT domain-containing protein; TAIR: AT1G18950.3 DDT domain superfamily; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|I1JX04|I1JX04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0186700 | 7 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0524300 | 10 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q922M5|CDA7L_MOUSE Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0524300 | 10 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 | 10 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 | 10 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi1g1v0749700 | 10 | ||
| – | Zinc-finger domain of monoamine-oxidase A repressor R1 protein; TAIR: AT5G38690.1 Zinc-finger domain of monoamine-oxidase A repressor R1 protein; Swiss-Prot: sp|Q96GN5|CDA7L_HUMAN Cell division cycle-associated 7-like protein; TrEMBL-Plants: tr|A0A072U7K4|A0A072U7K4_MEDTR Zinc-finger of monoamine-oxidase A repressor R1; Found in the gene: LotjaGi2g1v0054100 | 12 | ||
| – | Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100 | 32 | ||
| – | Homeobox protein, putative; TAIR: AT5G44180.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|Q9FFH1|RLT2_ARATH Homeobox-DDT domain protein RLT2; TrEMBL-Plants: tr|K7KY04|K7KY04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0242000 | 22 | ||
| – | Nucleosome-remodeling factor subunit BPTF; TAIR: AT5G22760.1 PHD finger family protein; Swiss-Prot: sp|F4JYC8|PTM_ARATH DDT domain-containing protein PTM; TrEMBL-Plants: tr|A0A1J7GFU1|A0A1J7GFU1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0481400 | 22 | ||
| – | Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0B2PKP8|A0A0B2PKP8_GLYSO Homeobox protein 10; Found in the gene: LotjaGi4g1v0061500 | 22 | ||
| – | DDT domain-containing protein; TAIR: AT1G18950.2 DDT domain superfamily; Swiss-Prot: sp|F4IDY7|DDR4_ARATH DDT domain-containing protein DDR4; TrEMBL-Plants: tr|A0A151SAB5|A0A151SAB5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0244200 | 8 | ||
| – | Homeodomain-like transcriptional regulator; TAIR: AT4G12750.1 Homeodomain-like transcriptional regulator; Swiss-Prot: sp|F4JRF5|RLT3_ARATH Homeobox-DDT domain protein RLT3; TrEMBL-Plants: tr|K7KRT9|K7KRT9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439900 | 12 | ||
| – | Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 | 22 | ||
| – | Homeobox protein, putative; TAIR: AT1G28420.1 homeobox-1; Swiss-Prot: sp|F4HY56|RLT1_ARATH Homeobox-DDT domain protein RLT1; TrEMBL-Plants: tr|A0A0L9VFB6|A0A0L9VFB6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0328200 | 22 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 2.86 |