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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029149
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.632s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2776600.1
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1| chr1 31710860 31715210 +
2 domain predictions
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Lj1g3v4931560.1
n.a. PREDICTED: probable Xaa-Pro aminopeptidase P-like [Glycine max] gi|356573012|ref|XP_003554659.1| chr1 59998551 60009790 +
2 domain predictions
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Lj2g3v1802050.1
n.a. PREDICTED: probable Xaa-Pro aminopeptidase P-like [Cicer arietinum] gi|502161070|ref|XP_004512011.1| chr2 27231129 27237379 +
2 domain predictions
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Lj4g3v3017350.1
n.a. PREDICTED: xaa-Pro dipeptidase-like [Cicer arietinum] gi|502138798|ref|XP_004503532.1| chr4 40475197 40481740 -
2 domain predictions
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Lj5g3v1529940.1
n.a. PREDICTED: probable Xaa-Pro aminopeptidase 3-like isoform X1 [Cicer arietinum] gi|502116920|ref|XP_004495639.1| chr5 22219842 22229973 +
2 domain predictions
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Lj6g3v0388030.1
n.a. n.a. chr6 3531782 3552499 +
2 domain predictions
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Lj6g3v0388030.2
n.a. n.a. chr6 3531782 3552499 +
2 domain predictions
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Lj6g3v0388060.1
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1| chr6 3533098 3537546 -
2 domain predictions
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Lj6g3v0388070.1
n.a. n.a. chr6 3533139 3535795 +
2 domain predictions
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Lj6g3v0389080.2
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356569402|ref|XP_003552890.1| chr6 3549267 3554027 -
2 domain predictions
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LotjaGi1g1v0481300.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460332 99464115 +
2 domain predictions
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LotjaGi1g1v0481300.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460373 99464115 +
2 domain predictions
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LotjaGi1g1v0773100.1
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT3G05350.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|D1ZKF3|AMPP1_SORMK Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|A0A0R0F3E9|A0A0R0F3E9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0773100 LjG1.1_chr1 134601449 134614119 +
3 domain predictions
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LotjaGi1g1v0773100.2
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT3G05350.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|D5GAC6|AMPP1_TUBMM Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|K7MZY3|K7MZY3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0773100 LjG1.1_chr1 134601449 134614119 +
2 domain predictions
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LotjaGi2g1v0393500.1
n.a. Xaa-pro aminopeptidase, putative; TAIR: AT4G36760.1 aminopeptidase P1; Swiss-Prot: sp|D1ZKF3|AMPP1_SORMK Probable Xaa-Pro aminopeptidase P; TrEMBL-Plants: tr|G7KC66|G7KC66_MEDTR Xaa-pro aminopeptidase P; Found in the gene: LotjaGi2g1v0393500 LjG1.1_chr2 89068791 89077975 +
3 domain predictions
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LotjaGi4g1v0441400.1
n.a. Xaa-Pro dipeptidase; TAIR: AT4G29490.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|P12955|PEPD_HUMAN Xaa-Pro dipeptidase; TrEMBL-Plants: tr|I1K635|I1K635_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0441400 LjG1.1_chr4 81503736 81510839 -
3 domain predictions
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LotjaGi5g1v0231700.1
n.a. Xaa-pro aminopeptidase; TAIR: AT1G09300.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|B5DEQ3|XPP3_RAT Probable Xaa-Pro aminopeptidase 3; TrEMBL-Plants: tr|A0A0B2P0L0|A0A0B2P0L0_GLYSO Putative Xaa-Pro aminopeptidase 3; Found in the gene: LotjaGi5g1v0231700 LjG1.1_chr5 53915285 53925468 +
3 domain predictions
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LotjaGi5g1v0231700.2
n.a. Xaa-pro aminopeptidase; TAIR: AT1G09300.1 Metallopeptidase M24 family protein; Swiss-Prot: sp|B5DEQ3|XPP3_RAT Probable Xaa-Pro aminopeptidase 3; TrEMBL-Plants: tr|I1NEY0|I1NEY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0231700 LjG1.1_chr5 53915395 53923857 +
3 domain predictions
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LotjaGi6g1v0051400.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211120 9216841 -
2 domain predictions
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LotjaGi6g1v0051400.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215140 -
2 domain predictions
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LotjaGi6g1v0051400.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215189 -
2 domain predictions
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LotjaGi6g1v0051500.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240360 9243974 -
2 domain predictions
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LotjaGi6g1v0051500.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240392 9245461 -
2 domain predictions
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LotjaGi6g1v0051500.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240765 9243974 -
2 domain predictions
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