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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0051400 |
| Transcript ID | LotjaGi6g1v0051400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9211869..9215140) extracted from Lotus japonicus Gifu genome v1.2.
ACTTGCTCATTGACGTTACTGTCTTATTTTTTCTTTTTAAAAAATTTCCAGGGTGGCAGCAAACCATGACAGATCATCGA AATGGGAAATCACAAACTCCCAGTGGAAAGGGTGGTGCAGCAGGAACTTCATATGCTATTGATCTGAATGCATTTCAATC CCGATTGAGGACTCTTTATTCACATTGGGATGAACACAAAACAGATCTGTGGGGCTCTTCTGATGCAATTGCAATTGCAT GTCCTCCACCTTCTGAAGACCTGCGATACCTTAAATCTACCGCTCTAAACTTATGGTTGCTTGGATTTGAATTCCCAGAC ACAATTATGGTTTTCATGAAGAATCAGATCCATATCTTGTGCAGCCAAAAGAAAGCATCTATTCTTGAATCTGTCAAAAA ACCTGCCCGAGAAGCAGTTGGTGTAGAACTGGAAGTTGTTTTGCATGTCAAGCCTAAAAATGATGATGGCACTGCTCTAA TGGATGCTATATTCCGTGCTATCAGAGCTCAATCAAAGTCTGATGGCGGTGATGCTTCCACCATTGGATATATATCAAGA GAAGCTCCAGAGGGGAAACTCCTTGAAGCTTGGGCTGAAAAATTGAAAAGTTCAGATTTTCATTTGACTGACGTGGCCAA TGGATTATCTACGTTGTTTGCTGTGAAGAGTAATGAGGAGCTTACATCAATTAAGAGAGCAGCATACCTGACAACCAGTG TGATGAAGAACTTTGTGGTTTCAAAGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCATTCTACATTGATGGAG GAGACTGAGAAAGTTGTACTGGAGCCTTCAAAAGTTAACTGTAAACTGAAAGCCGAGAATGTTGATATTTGTTACCCCCC AATTTTTCAGAGTGGGGTGGAATTTGATCTCAGGCCTAGTGCTGTCAGCAATGATGATTTACTTCACTATGACCCTGCCA GTGTGATTATATGTGCTGTTGGAGCCCGGTATAAGAGTTACTGCTCAAACATAGCTAGGACCTTCTTAATTGATGCTGAC CCTGTTCAAAGTAAGGCTTATGAAGCACTTCTGAAAGCCCAAGAAGCTGTAATTGGTTCCTTGAAGCCTGGAAATAAGCT GAGTGTCGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGAGACTCCTGAATTGATTTCCAACTTAACAAAATCTGCTG GGACTGGCATTGGCATTGAGTTTCGTGAATCAGGATTGAATCTTAATGCTAAAAATGAACAGATTATTAAAGAAGGCATG GTCTTCAACGTGTCACTTGGAATTCAGAATTTGCAGAATGAGAACAGTAAGTCTAAGAGCAAGCTCTTCTCTCTCTTGCT TGCTGACACAGTCATCATCAACAAGGACAAGACAGAAGTTCTGACTTCTATGAGCTCAAAAGCTCTTAAGGATGTGGCGT ATTCTTTCAATGAGGATGAGGAAGAGGAAAAGCAAAGCACAAAAGCAAAAACAAATGGCGCAGAGCCCATTATTTCTAAG ACAACTCTAAGGTCAGACAATCATGAAGTTTCAAAAGAGGAACTCAGAAGGCAGCATCAGGCTGAACTTGCTCGTCAGAA AAATGAAGAAACTGCAAGGAGACTTGCTGGTGGTGGAAATGCGACTGGAGATAACCGTTCGTCTATGAGGTCTTCTGCAG ATCTTGTGGCCTACAAGAACATAAATGAACTTCCCCCTCCCAGAGAGTTGATGATTCAGATTGATCAAAAGAATGAAGCA GTTCTCTTGCCTATTAATGGAAGTATGGTTCCTTTTCATGTTGCTTTCATTCGGACTGTTTCTAGCCAGCAGGAAAACCG CATCTGGTATATGAGAATTATTTTTAATGTTCCTGGGACTCCTTTTAGCTCTCAGGATGCGAACTCAATGAAGTACCCTG GTTCTATATATTTGAAGGAGGCTTCTTTCCGCTCAAAAGATTCCAGGCATATAAGTGAGGTTGTGCAGTCCATAAAAACC CTCAGGCGACAAGTTGTGGCAAGGGAGTCTGAGAGAGCTGAAAGGGCAACCTTGGTTACCCAGGAGAAGCTGCAGCTTGC TAATAACAGATTTAAGCCCATAAGGTTGTCTGATCTCTGGATCCGCCCTCCTTTTGGTGGACGTGGAAGGAAGATTCCTG GTACACTTGAGGCTCATGTGAATGGATTTCGTTATTCTACCACCAGGCAAGATGAGCGTGTGGACATAATGTTTAGCAAC ATTAAGCATGCATTTTTTCAGCCAGCAGAGAATGAAATGATCACACTCCTGCACTTTCATCTGCACAACCATATTATGGT AGGAAATAAAAAGACTAAGGATGTTCAGTTTTATGTAGAGGTAATGGACATGGTCCAGAATGTTGGAGGTGGGAAAAGAT CCACCTATGACCCTGATGAACTTGAAGAAGAACAGAGAGAGAGAGACCGAAAGAACAAAATTAATGTAGAATTTCAGACC TTTGTGAATCGAGTGAATGATCTCTGGGGGCAACCACAATTCAATGGCCTTGACTTGGAGTTTGATCAACCTCTAAGAGA ACTTGGCTTCCCTGGAGTACCTCATAAATCTTCAGTATTTATTGTTCCTACTTCAGCCTGCCTTGTTGAACTGATAGAGA CCCCTTTCCTTGTTGTCACACTAAGTGAGATTGAGATTGTGAATCTAGAGAGAGTTGGGCTTGGGCAGAAGAACTTTGAT ATGACAATAGTATTTAAGGACTTCAAGCGGGATGTGCTCAGGATTGATTCTATCCCTTCTACATCACTGGATGGCATCAA GGAGTGGCTTGACACCACAGACATCAAATATTACGAAAGCAGGCTGAATCTGAACTGGCGCCAGATCCTAAAAACAATCA CGGATGACCCTAAAAGCTTTATTGAAACTGGTGGTTGGGAGTTTCTGAACCTGGAAGCTAGTGATTCAGAATCTGATAAC TCAGAGGAGTCAGATAAAGGTTACGAACCATCTGATGTGGAGCCGGAGTCTGATTCTGAAGATGAAGCTTCTGAAAGTGC ATCGCTAGTTGAGTCTGAGGATGATGATGAGGATGAGGACTCTGAGGTAGATTCAGAGGAAGAGAAGGGAAAGACCTGGG AAGAACTGGAGAGGGAAGCAAGCAATGCAGATAGGGAGAAAGGGCACGAGTATGACAGTGAAGAAGATAGGCAAAGAAGG AAGGTGAAAGCCTTTGGTAAGTCTCGAGCCAGTGCAAGTAGTAGCATGCCGAAGCGGTCAAAGTTAAGATAG
CDS sequence (LotjaGi6g1v0051400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATCATCGAAATGGGAAATCACAAACTCCCAGTGGAAAGGGTGGTGCAGCAGGAACTTCATATGCTATTGATCT GAATGCATTTCAATCCCGATTGAGGACTCTTTATTCACATTGGGATGAACACAAAACAGATCTGTGGGGCTCTTCTGATG CAATTGCAATTGCATGTCCTCCACCTTCTGAAGACCTGCGATACCTTAAATCTACCGCTCTAAACTTATGGTTGCTTGGA TTTGAATTCCCAGACACAATTATGGTTTTCATGAAGAATCAGATCCATATCTTGTGCAGCCAAAAGAAAGCATCTATTCT TGAATCTGTCAAAAAACCTGCCCGAGAAGCAGTTGGTGTAGAACTGGAAGTTGTTTTGCATGTCAAGCCTAAAAATGATG ATGGCACTGCTCTAATGGATGCTATATTCCGTGCTATCAGAGCTCAATCAAAGTCTGATGGCGGTGATGCTTCCACCATT GGATATATATCAAGAGAAGCTCCAGAGGGGAAACTCCTTGAAGCTTGGGCTGAAAAATTGAAAAGTTCAGATTTTCATTT GACTGACGTGGCCAATGGATTATCTACGTTGTTTGCTGTGAAGAGTAATGAGGAGCTTACATCAATTAAGAGAGCAGCAT ACCTGACAACCAGTGTGATGAAGAACTTTGTGGTTTCAAAGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCAT TCTACATTGATGGAGGAGACTGAGAAAGTTGTACTGGAGCCTTCAAAAGTTAACTGTAAACTGAAAGCCGAGAATGTTGA TATTTGTTACCCCCCAATTTTTCAGAGTGGGGTGGAATTTGATCTCAGGCCTAGTGCTGTCAGCAATGATGATTTACTTC ACTATGACCCTGCCAGTGTGATTATATGTGCTGTTGGAGCCCGGTATAAGAGTTACTGCTCAAACATAGCTAGGACCTTC TTAATTGATGCTGACCCTGTTCAAAGTAAGGCTTATGAAGCACTTCTGAAAGCCCAAGAAGCTGTAATTGGTTCCTTGAA GCCTGGAAATAAGCTGAGTGTCGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGAGACTCCTGAATTGATTTCCAACT TAACAAAATCTGCTGGGACTGGCATTGGCATTGAGTTTCGTGAATCAGGATTGAATCTTAATGCTAAAAATGAACAGATT ATTAAAGAAGGCATGGTCTTCAACGTGTCACTTGGAATTCAGAATTTGCAGAATGAGAACAGTAAGTCTAAGAGCAAGCT CTTCTCTCTCTTGCTTGCTGACACAGTCATCATCAACAAGGACAAGACAGAAGTTCTGACTTCTATGAGCTCAAAAGCTC TTAAGGATGTGGCGTATTCTTTCAATGAGGATGAGGAAGAGGAAAAGCAAAGCACAAAAGCAAAAACAAATGGCGCAGAG CCCATTATTTCTAAGACAACTCTAAGGTCAGACAATCATGAAGTTTCAAAAGAGGAACTCAGAAGGCAGCATCAGGCTGA ACTTGCTCGTCAGAAAAATGAAGAAACTGCAAGGAGACTTGCTGGTGGTGGAAATGCGACTGGAGATAACCGTTCGTCTA TGAGGTCTTCTGCAGATCTTGTGGCCTACAAGAACATAAATGAACTTCCCCCTCCCAGAGAGTTGATGATTCAGATTGAT CAAAAGAATGAAGCAGTTCTCTTGCCTATTAATGGAAGTATGGTTCCTTTTCATGTTGCTTTCATTCGGACTGTTTCTAG CCAGCAGGAAAACCGCATCTGGTATATGAGAATTATTTTTAATGTTCCTGGGACTCCTTTTAGCTCTCAGGATGCGAACT CAATGAAGTACCCTGGTTCTATATATTTGAAGGAGGCTTCTTTCCGCTCAAAAGATTCCAGGCATATAAGTGAGGTTGTG CAGTCCATAAAAACCCTCAGGCGACAAGTTGTGGCAAGGGAGTCTGAGAGAGCTGAAAGGGCAACCTTGGTTACCCAGGA GAAGCTGCAGCTTGCTAATAACAGATTTAAGCCCATAAGGTTGTCTGATCTCTGGATCCGCCCTCCTTTTGGTGGACGTG GAAGGAAGATTCCTGGTACACTTGAGGCTCATGTGAATGGATTTCGTTATTCTACCACCAGGCAAGATGAGCGTGTGGAC ATAATGTTTAGCAACATTAAGCATGCATTTTTTCAGCCAGCAGAGAATGAAATGATCACACTCCTGCACTTTCATCTGCA CAACCATATTATGGTAGGAAATAAAAAGACTAAGGATGTTCAGTTTTATGTAGAGGTAATGGACATGGTCCAGAATGTTG GAGGTGGGAAAAGATCCACCTATGACCCTGATGAACTTGAAGAAGAACAGAGAGAGAGAGACCGAAAGAACAAAATTAAT GTAGAATTTCAGACCTTTGTGAATCGAGTGAATGATCTCTGGGGGCAACCACAATTCAATGGCCTTGACTTGGAGTTTGA TCAACCTCTAAGAGAACTTGGCTTCCCTGGAGTACCTCATAAATCTTCAGTATTTATTGTTCCTACTTCAGCCTGCCTTG TTGAACTGATAGAGACCCCTTTCCTTGTTGTCACACTAAGTGAGATTGAGATTGTGAATCTAGAGAGAGTTGGGCTTGGG CAGAAGAACTTTGATATGACAATAGTATTTAAGGACTTCAAGCGGGATGTGCTCAGGATTGATTCTATCCCTTCTACATC ACTGGATGGCATCAAGGAGTGGCTTGACACCACAGACATCAAATATTACGAAAGCAGGCTGAATCTGAACTGGCGCCAGA TCCTAAAAACAATCACGGATGACCCTAAAAGCTTTATTGAAACTGGTGGTTGGGAGTTTCTGAACCTGGAAGCTAGTGAT TCAGAATCTGATAACTCAGAGGAGTCAGATAAAGGTTACGAACCATCTGATGTGGAGCCGGAGTCTGATTCTGAAGATGA AGCTTCTGAAAGTGCATCGCTAGTTGAGTCTGAGGATGATGATGAGGATGAGGACTCTGAGGTAGATTCAGAGGAAGAGA AGGGAAAGACCTGGGAAGAACTGGAGAGGGAAGCAAGCAATGCAGATAGGGAGAAAGGGCACGAGTATGACAGTGAAGAA GATAGGCAAAGAAGGAAGGTGAAAGCCTTTGGTAAGTCTCGAGCCAGTGCAAGTAGTAGCATGCCGAAGCGGTCAAAGTT AAGATAG
Protein sequence (LotjaGi6g1v0051400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDHRNGKSQTPSGKGGAAGTSYAIDLNAFQSRLRTLYSHWDEHKTDLWGSSDAIAIACPPPSEDLRYLKSTALNLWLLG FEFPDTIMVFMKNQIHILCSQKKASILESVKKPAREAVGVELEVVLHVKPKNDDGTALMDAIFRAIRAQSKSDGGDASTI GYISREAPEGKLLEAWAEKLKSSDFHLTDVANGLSTLFAVKSNEELTSIKRAAYLTTSVMKNFVVSKLENVIDEEKKVSH STLMEETEKVVLEPSKVNCKLKAENVDICYPPIFQSGVEFDLRPSAVSNDDLLHYDPASVIICAVGARYKSYCSNIARTF LIDADPVQSKAYEALLKAQEAVIGSLKPGNKLSVAYQAAVSVVEKETPELISNLTKSAGTGIGIEFRESGLNLNAKNEQI IKEGMVFNVSLGIQNLQNENSKSKSKLFSLLLADTVIINKDKTEVLTSMSSKALKDVAYSFNEDEEEEKQSTKAKTNGAE PIISKTTLRSDNHEVSKEELRRQHQAELARQKNEETARRLAGGGNATGDNRSSMRSSADLVAYKNINELPPPRELMIQID QKNEAVLLPINGSMVPFHVAFIRTVSSQQENRIWYMRIIFNVPGTPFSSQDANSMKYPGSIYLKEASFRSKDSRHISEVV QSIKTLRRQVVARESERAERATLVTQEKLQLANNRFKPIRLSDLWIRPPFGGRGRKIPGTLEAHVNGFRYSTTRQDERVD IMFSNIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSTYDPDELEEEQRERDRKNKIN VEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLSEIEIVNLERVGLG QKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPKSFIETGGWEFLNLEASD SESDNSEESDKGYEPSDVEPESDSEDEASESASLVESEDDDEDEDSEVDSEEEKGKTWEELEREASNADREKGHEYDSEE DRQRRKVKAFGKSRASASSSMPKRSKLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 1067 | 1055 | 0.0 | ||
| PANTHER | 13 | 1067 | 1055 | 0.0 | – | |
| Gene3D | 24 | 198 | 175 | 7.0E-65 | ||
| Pfam | 25 | 192 | 168 | 2.2E-49 | ||
| SMART | 25 | 194 | 170 | 1.0E-75 | ||
| Gene3D | 199 | 460 | 262 | 9.7E-67 | ||
| SUPERFAMILY | 202 | 466 | 265 | 3.01E-34 | ||
| CDD | 206 | 448 | 243 | 5.16698E-99 | ||
| Pfam | 209 | 438 | 230 | 2.3E-30 | ||
| MobiDBLite | 465 | 496 | 32 | - | – | |
| MobiDBLite | 475 | 489 | 15 | - | – | |
| MobiDBLite | 508 | 535 | 28 | - | – | |
| Gene3D | 533 | 657 | 125 | 8.1E-37 | – | |
| Pfam | 557 | 710 | 154 | 1.1E-51 | ||
| SMART | 557 | 710 | 154 | 1.5E-84 | ||
| Gene3D | 658 | 820 | 163 | 1.3E-63 | – | |
| Gene3D | 828 | 959 | 132 | 2.5E-54 | ||
| SMART | 835 | 925 | 91 | 6.6E-38 | ||
| Pfam | 838 | 923 | 86 | 5.4E-17 | ||
| MobiDBLite | 956 | 1068 | 113 | - | – | |
| MobiDBLite | 979 | 1010 | 32 | - | – | |
| MobiDBLite | 1011 | 1047 | 37 | - | – | |
| MobiDBLite | 1053 | 1068 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | FACT complex | An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer. |
Expression pattern of LotjaGi6g1v0051400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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