Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0481300 |
| Transcript ID | LotjaGi1g1v0481300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99460373..99464115) extracted from Lotus japonicus Gifu genome v1.2.
GTTTGCCCACTTGCTCATTGACGTTAATGCCATTTTTTTGTTCTTTTAAAAAAAATTCCAGGGGCAGCAAACCATGACAG ATCGTCGAAATGGAAAATCGCAAACTCCCATCGGAAAGAGTAGTGCAGCAGGAACATTATATTCCATTGATCTGAATGCA TTTCAATCCCGATTGAGGACTCTTTATTCACATTGGGATGAACACAGAACAGATCTGTGGGGCTCTTCTGATGCAATTGC AATTGCGTGTCCTCCACCTTCTGAAGACCTGCGATACCTGAAATCTACCGCTTTGAACTTATGGCTGCTTGGATTTGAAT TCCCAGAAACAATTATGGTTTTCATGAAGAAGCAGATTCATATGTTGTGCAGCCAGAAGAAGGCATCTATTCTTGAATCT GTCAAAAAACCAGCCCGAGAAGCAGTTGGTGTTGAACTAGAAGTTGTTTTGCATGTCAAGCCCAAAAATGAAGATGGCAC TGCTCTAATGGATGCTATATTTCTTGCTATCCGAGCTCAATCAAAATCTGATGGCCGTGATGCTTCCACCATTGGATATA TATCAAGAGAAGCTCCGGAGGGGAAACTCCTTAAAGCATGGGCTGAAAAACTGAAAAATTCAAATTTTCATTTGATTGAT GTGGCCAACGGATTATCTACATTGTTTGCTGTGAAGAGTAATGAGGAGCTTACATCAATTAAGAGAGCAGCATACCTGAC AACCAGTGTGATGAAGAACTTTGTTGTGTCAAAGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCATTCTACGT TGATGGAGGAGACTGAGAAAGTTGTACTGGAGCCTTCAAAAGTTAACTGTAAACTGAAGGCTGAGAATGTTGATATTTGT TATCCCCCAATTTTTCAGAGTGAGGTGGGGTTTGATCTCAGGCCTAGTGCTGTGAGCAATGATGATTTACTTCACTATGA CACTGCCAGTGTGATTATATGTGCTGTTGGAGCTCGGTATAAGAGTTACTGCTCAAACATAGCTAGGACCTTCTTAATTG ATGCTGATCCTCTGCAAAGTAAGGCTTATGAAGTACTTCTGAAAGCCCAAGAAGCTGTAATTTGTTCTTTGAAGCCTGGA AATAAGCTGAGTGTCGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGATGCTCCTGAATTGATTTCCAACTTAACAAA GTCTGCTGGGACTAGCATCGGCATTGAGTTTCGTGAGTCAGGATTAAATCTTAATGCTAAAAATGAACAGATAATTAAGG AAGGCATGGTCTTCAACGTGTCACTTGGAATGCAGAATTTGCAGAATGACAACAGTAAGCTCTTCTCTCTCTTGCTTGCT GACACAATCATCATTAATAAAGACAGGACAGAAGTTCTTACAACTATGAGCTCAAAAGCTCTTAAGGACGTGGCTTATTC TTTCAAGGAGGACGAGGAAGAGGAAAAGCAAAGCACCAAAGCAGATACAAATGGTGCAGAGCCCATTATTTCTAAGACGA CTCAAAGGTCAGACAATCATGAAATTTCGAAAGAGCAACTCAGAAGGAAGCATCAGGCAGAACTTGCTCGTCAGAAAAAT GAGGAAACTGCTAGGAGACTTGCTGGTGGTGGAAATGCTACTGGAGATAACCGTTTCTCTGTGAGGACTACTGCAGATCA GGTGGCCTACAAGAACATTAGTGAACTTCCCCTCCCTCCCAGAGAGAGGATGATTCAGATTGATCAAAAGAATGAAGCAG TTCTTTTGCCTATTAATGGAAGTATGTGTCCTTTTCATGTGGCTTTCATTCGAACTGTTTCCAGCAAACAGGACACCAAC CACAATTGTTGTATCAGAATTCTTTTTAATGTTCCCGGGACCCCTCAGGATGCAATCTCAATGAAGTACCCTGGTTCTAT ATATTTAAAGGAGGCTTCTTTCCGCTCTGAAGATTCCAGGCATATAAGTGAGGTTTTGCAGTCCATAAATAAACTCAGGC GGCAAGTTGTGGCAAGGGAGTCTGAGAGAGCTGACAGGGCAACCTTGGTTACCCAGGAGAAGCTGCAGCTTGCTAATAAC AGATTTAAGCCCATAAGATTGCCTAATCTCTGGATCCGCCCTCCTTTTGGTGGACGTGGAAGGAAGATTTCTGGTGCACT TGAGGCTCATGTGAATGGATTTCGTTACTCTACCACCAGGCAAGATGAGCGTGTGGACATAATGTTTAGCAACATTAAAC ATGCATTTTTTCAGCCAGCAGAGAATGAAATGATTACACTCGTGCACTTTCATCTGCACAACCATATTATGGTAGGAAGT AAAAAGGCTAAGGATGTTCAGTTTTATGTAGAGGTAATGGACATGGTCCAGAACGTTGGAGGTGGAATATTATGTGAGTA CACTCGTGCACTTTCATCTGCACAACCATATTATGGTAGGAAGTAAAAAGGCTAAGGATGTTCAGTTGGGGGCTCGAAGA CGATCAGATACCGTCCTAGTCTCGAAGACGATCAGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAAC CATAAACGATGCCGACCAGGGATCAGCGGATGTTGCTTTTAGGACTCCGCTGGCACCTTATGAGAAATCAAAGGTCGACG CAGGCTTTGCCTGTTGCTTTGATGATTCATGATAACTCGTCGGATCGCACGGCCTTTGTGCCGGCGACGCATCATTCAAA TTTCTGTCATTCCATAGCCTATGACCCTGATGAAAAAGATCAGCAGAGAATGAAATGATTACACTCGTGCACTTTCATCT GCACAACCATATTATGGTAGGAAGTAAAAAGGCTAAGGATGTTCAGTTTTATGTAGAGGTAATGGACATGGTCCAGAACG TTGGAGGTGGAAAAAGATCAGCCTATGACCCTGATGAAGTTGAAGAAGAACAGAGAGAAAGAGACAGGAAAAACAAAATT AATGTAGAATTTCAGAGCTTTGTGAATCGAACAAATGATCTCTGGGGGCAACCGCAATTCAATGGCCTTGACCTGGAGTT TGATCAACCTCTAAGACAACTTGGCTTCACTGGAGATCCTCATAAATCTTCAGTATTTGTTGTTCCTACTTCAGCGTGCC TTGTTGAACTGATAGAGACCCCTTTCCTTGTTGTCACACTAAGTGAGATTGAGATTGTGAATCTCGAGAGAGTCGGGCTT GTGCAGAAGACCTTTGATATGACAATAGTATTTAAGGACTTTAAGCGGGATGTGCTCAGGATTGATTCTATTCCTTCTGC ATCACTGCGTGGCATCAAGGAGTGGCTTGACGCGATGGACATTAAATATTATGAAAGCAGGCTCAATCTGAACTGGCGTC CGATCCTAAAGACAACCAGGGATGACCCTAAAGGCTTTATTGAACGTGGTTGGGAGTTTCTGAACCAGGATGCTAGTGAT TCAGAGTCTGATAACTCAGAGGAGTCAGATAAAGGTTATGAACCATCCGTTGTGGAGCTGGAGTCTGATTCTGAAGATGA TGCTTCTGACAGTGAATCACTTGTTGAGTCTGAGGATGAGGAGGAGGATTTTGAGGAAGAGGAAGAGGAAGAGAAGGGGA GGGAAGCAACCAATGCAGATATGGAGAAAGGGAACGAGTATGACAGTGAAGAAGATAGGCAAAGAAGGAAGGCGAAGAAA GACTTTGGTAAGTCAAGAGCCAGTGCAAGTAGTAGCGTGGCAAAGCGGTCAAAGATAAGATAG
CDS sequence (LotjaGi1g1v0481300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATCGTCGAAATGGAAAATCGCAAACTCCCATCGGAAAGAGTAGTGCAGCAGGAACATTATATTCCATTGATCT GAATGCATTTCAATCCCGATTGAGGACTCTTTATTCACATTGGGATGAACACAGAACAGATCTGTGGGGCTCTTCTGATG CAATTGCAATTGCGTGTCCTCCACCTTCTGAAGACCTGCGATACCTGAAATCTACCGCTTTGAACTTATGGCTGCTTGGA TTTGAATTCCCAGAAACAATTATGGTTTTCATGAAGAAGCAGATTCATATGTTGTGCAGCCAGAAGAAGGCATCTATTCT TGAATCTGTCAAAAAACCAGCCCGAGAAGCAGTTGGTGTTGAACTAGAAGTTGTTTTGCATGTCAAGCCCAAAAATGAAG ATGGCACTGCTCTAATGGATGCTATATTTCTTGCTATCCGAGCTCAATCAAAATCTGATGGCCGTGATGCTTCCACCATT GGATATATATCAAGAGAAGCTCCGGAGGGGAAACTCCTTAAAGCATGGGCTGAAAAACTGAAAAATTCAAATTTTCATTT GATTGATGTGGCCAACGGATTATCTACATTGTTTGCTGTGAAGAGTAATGAGGAGCTTACATCAATTAAGAGAGCAGCAT ACCTGACAACCAGTGTGATGAAGAACTTTGTTGTGTCAAAGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCAT TCTACGTTGATGGAGGAGACTGAGAAAGTTGTACTGGAGCCTTCAAAAGTTAACTGTAAACTGAAGGCTGAGAATGTTGA TATTTGTTATCCCCCAATTTTTCAGAGTGAGGTGGGGTTTGATCTCAGGCCTAGTGCTGTGAGCAATGATGATTTACTTC ACTATGACACTGCCAGTGTGATTATATGTGCTGTTGGAGCTCGGTATAAGAGTTACTGCTCAAACATAGCTAGGACCTTC TTAATTGATGCTGATCCTCTGCAAAGTAAGGCTTATGAAGTACTTCTGAAAGCCCAAGAAGCTGTAATTTGTTCTTTGAA GCCTGGAAATAAGCTGAGTGTCGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGATGCTCCTGAATTGATTTCCAACT TAACAAAGTCTGCTGGGACTAGCATCGGCATTGAGTTTCGTGAGTCAGGATTAAATCTTAATGCTAAAAATGAACAGATA ATTAAGGAAGGCATGGTCTTCAACGTGTCACTTGGAATGCAGAATTTGCAGAATGACAACAGTAAGCTCTTCTCTCTCTT GCTTGCTGACACAATCATCATTAATAAAGACAGGACAGAAGTTCTTACAACTATGAGCTCAAAAGCTCTTAAGGACGTGG CTTATTCTTTCAAGGAGGACGAGGAAGAGGAAAAGCAAAGCACCAAAGCAGATACAAATGGTGCAGAGCCCATTATTTCT AAGACGACTCAAAGGTCAGACAATCATGAAATTTCGAAAGAGCAACTCAGAAGGAAGCATCAGGCAGAACTTGCTCGTCA GAAAAATGAGGAAACTGCTAGGAGACTTGCTGGTGGTGGAAATGCTACTGGAGATAACCGTTTCTCTGTGAGGACTACTG CAGATCAGGTGGCCTACAAGAACATTAGTGAACTTCCCCTCCCTCCCAGAGAGAGGATGATTCAGATTGATCAAAAGAAT GAAGCAGTTCTTTTGCCTATTAATGGAAGTATGTGTCCTTTTCATGTGGCTTTCATTCGAACTGTTTCCAGCAAACAGGA CACCAACCACAATTGTTGTATCAGAATTCTTTTTAATGTTCCCGGGACCCCTCAGGATGCAATCTCAATGAAGTACCCTG GTTCTATATATTTAAAGGAGGCTTCTTTCCGCTCTGAAGATTCCAGGCATATAAGTGAGGTTTTGCAGTCCATAAATAAA CTCAGGCGGCAAGTTGTGGCAAGGGAGTCTGAGAGAGCTGACAGGGCAACCTTGGTTACCCAGGAGAAGCTGCAGCTTGC TAATAACAGATTTAAGCCCATAAGATTGCCTAATCTCTGGATCCGCCCTCCTTTTGGTGGACGTGGAAGGAAGATTTCTG GTGCACTTGAGGCTCATGTGAATGGATTTCGTTACTCTACCACCAGGCAAGATGAGCGTGTGGACATAATGTTTAGCAAC ATTAAACATGCATTTTTTCAGCCAGCAGAGAATGAAATGATTACACTCGTGCACTTTCATCTGCACAACCATATTATGGT AGGAAGTAAAAAGGCTAAGGATGTTCAGTTTTATGTAGAGGTAATGGACATGGTCCAGAACGTTGGAGGTGGAAAAAGAT CAGCCTATGACCCTGATGAAGTTGAAGAAGAACAGAGAGAAAGAGACAGGAAAAACAAAATTAATGTAGAATTTCAGAGC TTTGTGAATCGAACAAATGATCTCTGGGGGCAACCGCAATTCAATGGCCTTGACCTGGAGTTTGATCAACCTCTAAGACA ACTTGGCTTCACTGGAGATCCTCATAAATCTTCAGTATTTGTTGTTCCTACTTCAGCGTGCCTTGTTGAACTGATAGAGA CCCCTTTCCTTGTTGTCACACTAAGTGAGATTGAGATTGTGAATCTCGAGAGAGTCGGGCTTGTGCAGAAGACCTTTGAT ATGACAATAGTATTTAAGGACTTTAAGCGGGATGTGCTCAGGATTGATTCTATTCCTTCTGCATCACTGCGTGGCATCAA GGAGTGGCTTGACGCGATGGACATTAAATATTATGAAAGCAGGCTCAATCTGAACTGGCGTCCGATCCTAAAGACAACCA GGGATGACCCTAAAGGCTTTATTGAACGTGGTTGGGAGTTTCTGAACCAGGATGCTAGTGATTCAGAGTCTGATAACTCA GAGGAGTCAGATAAAGGTTATGAACCATCCGTTGTGGAGCTGGAGTCTGATTCTGAAGATGATGCTTCTGACAGTGAATC ACTTGTTGAGTCTGAGGATGAGGAGGAGGATTTTGAGGAAGAGGAAGAGGAAGAGAAGGGGAGGGAAGCAACCAATGCAG ATATGGAGAAAGGGAACGAGTATGACAGTGAAGAAGATAGGCAAAGAAGGAAGGCGAAGAAAGACTTTGGTAAGTCAAGA GCCAGTGCAAGTAGTAGCGTGGCAAAGCGGTCAAAGATAAGATAG
Protein sequence (LotjaGi1g1v0481300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDRRNGKSQTPIGKSSAAGTLYSIDLNAFQSRLRTLYSHWDEHRTDLWGSSDAIAIACPPPSEDLRYLKSTALNLWLLG FEFPETIMVFMKKQIHMLCSQKKASILESVKKPAREAVGVELEVVLHVKPKNEDGTALMDAIFLAIRAQSKSDGRDASTI GYISREAPEGKLLKAWAEKLKNSNFHLIDVANGLSTLFAVKSNEELTSIKRAAYLTTSVMKNFVVSKLENVIDEEKKVSH STLMEETEKVVLEPSKVNCKLKAENVDICYPPIFQSEVGFDLRPSAVSNDDLLHYDTASVIICAVGARYKSYCSNIARTF LIDADPLQSKAYEVLLKAQEAVICSLKPGNKLSVAYQAAVSVVEKDAPELISNLTKSAGTSIGIEFRESGLNLNAKNEQI IKEGMVFNVSLGMQNLQNDNSKLFSLLLADTIIINKDRTEVLTTMSSKALKDVAYSFKEDEEEEKQSTKADTNGAEPIIS KTTQRSDNHEISKEQLRRKHQAELARQKNEETARRLAGGGNATGDNRFSVRTTADQVAYKNISELPLPPRERMIQIDQKN EAVLLPINGSMCPFHVAFIRTVSSKQDTNHNCCIRILFNVPGTPQDAISMKYPGSIYLKEASFRSEDSRHISEVLQSINK LRRQVVARESERADRATLVTQEKLQLANNRFKPIRLPNLWIRPPFGGRGRKISGALEAHVNGFRYSTTRQDERVDIMFSN IKHAFFQPAENEMITLVHFHLHNHIMVGSKKAKDVQFYVEVMDMVQNVGGGKRSAYDPDEVEEEQRERDRKNKINVEFQS FVNRTNDLWGQPQFNGLDLEFDQPLRQLGFTGDPHKSSVFVVPTSACLVELIETPFLVVTLSEIEIVNLERVGLVQKTFD MTIVFKDFKRDVLRIDSIPSASLRGIKEWLDAMDIKYYESRLNLNWRPILKTTRDDPKGFIERGWEFLNQDASDSESDNS EESDKGYEPSVVELESDSEDDASDSESLVESEDEEEDFEEEEEEEKGREATNADMEKGNEYDSEEDRQRRKAKKDFGKSR ASASSSVAKRSKIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 1053 | 1041 | 0.0 | ||
| PANTHER | 13 | 1053 | 1041 | 0.0 | – | |
| Gene3D | 24 | 198 | 175 | 1.5E-63 | ||
| Pfam | 25 | 192 | 168 | 3.8E-48 | ||
| SMART | 25 | 194 | 170 | 6.9E-71 | ||
| Gene3D | 199 | 456 | 258 | 3.2E-61 | ||
| SUPERFAMILY | 202 | 462 | 261 | 4.97E-30 | ||
| CDD | 206 | 444 | 239 | 4.82469E-94 | ||
| Pfam | 209 | 434 | 226 | 7.4E-27 | ||
| MobiDBLite | 459 | 492 | 34 | - | – | |
| MobiDBLite | 471 | 485 | 15 | - | – | |
| Coils | 479 | 499 | 21 | - | – | |
| MobiDBLite | 506 | 529 | 24 | - | – | |
| Gene3D | 529 | 652 | 124 | 4.3E-30 | – | |
| SMART | 554 | 705 | 152 | 2.4E-69 | ||
| Pfam | 554 | 705 | 152 | 3.7E-45 | ||
| Gene3D | 653 | 814 | 162 | 6.6E-61 | – | |
| MobiDBLite | 770 | 789 | 20 | - | – | |
| MobiDBLite | 775 | 789 | 15 | - | – | |
| Gene3D | 823 | 953 | 131 | 4.4E-49 | ||
| SMART | 830 | 920 | 91 | 6.0E-32 | ||
| Pfam | 837 | 918 | 82 | 8.0E-16 | ||
| MobiDBLite | 951 | 1054 | 104 | - | – | |
| MobiDBLite | 973 | 1007 | 35 | - | – | |
| Coils | 988 | 1008 | 21 | - | – | |
| MobiDBLite | 1008 | 1032 | 25 | - | – | |
| MobiDBLite | 1039 | 1054 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | FACT complex | An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer. |
Expression pattern of LotjaGi1g1v0481300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…