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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0051500 |
| Transcript ID | LotjaGi6g1v0051500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9240392..9245461) extracted from Lotus japonicus Gifu genome v1.2.
ATCGCGAAGGTTCTATGAGCGGTTAGAATTTCAAAAATATTACAATTCATGCCATTATTTTGCCCGCGGTACTTTGGCGC ATTTTCTTTATTTTCATTCAACCGCGACTCCCTCCCTCCGGTTTTAAGAGTCCCGTCACGACCATCGCTACAACTGAACC CTAATTTCACCCTCTCGCATTTCTCAACACTCTTCTTCTTTCTCCATCTCAAATGGCATAGAGCCACACTTCAAAACCCT AATTTCAACAACAACAACAACCACCAATTAGGGTTTCACACCCTACCCCATTTTCTTCGAAGAACAAAACCACCAATTAG GGTTCGCACCGCGCAGAAGACACTCCTCAACTCTGGAAAACGCACTTTCTCCTTCGTGGTGAACTTCGCAGCGAAACGAG CAGCTTTTACACCTTCGACAACGAACGAACGACTGAGTGAGTTTTTTTTCTTTTCTTTTTCTTGTTTTTTCATCTTCGTC TGAATTCGGGTGAAACGAACTACCAGTTCTTTTTCCTATCATGATTATTTGTTGGTGGATTTCGATGTTATGTGAATTTT GTATTTTACTGTAAATGTTGGATGCTGCGGCGGTGTGCGGTTGCGGGACGACGTGAAAACCCTAGAATTTGCATGGGTAA TTTTTTCGAATGTTTTGATTATGTTGGTTGAATTCTGTGTTTTGATTTCCGTCCAAGTTGCGAAAACTGTGTCGATTCTT ACTTCAGTTCTGTTTTATGCATTTGGTTTTCTGGATCTCTTGTGAAATTGAATTTTGTGCTGAGTTTTGCAAGTATAGTT ACTCTGCCTTCTGTGCTTTGTTGTGTGTAACTTTGCCATACTGATAGAAGTTTATGTTTGCTTACTGAAATTTGAAAGAG ACTGGTGTTTGTTTAGGATTTCTACTGCTAACCAATCATGTCCAGGTTTGAATGTTGTGAAAAGTCCAGTTATTTTTATT CATTGGACTGAAGTATTCTGAGTACTTTTTTCATGAAAGTTACTATTTACTGGAATTACTCACTGTATATGCTCAATATG TGCACACAGATTTCGTTTACTACTTCAATGTCTGTATAAAATATTTCAGGAGCTTCTTTTGTTTACCTTTTTAATGACTT CCCCTGATATGTATGGACAGTGTGTATTGGAGATTATAGAGATATTAGTCCATTTTCTATAGGGTTCTGATATTTATGAA ATGGGAAATTCCCTAGTTTAATTTCAAGGCTCATATGTATAGTGTGGAATAGAGAAACTTGAGCAATAGTTAAATTGTGT TGTGAGTACTTGAAATTTTTTAGTCATTCGTGTGCTGGAGCAGTATTTTGAGGCAAACCATGATAAAGTGGGACTCGACT CCCTGTTTATTTAATCAACCACCTTACACTGCCCTGAGGGGACTCTTGGAGTTTGTGTTCATAACTGAATTTTCTATTTC TTATTTGTTTTTTTATGTCTTTTTTTTTTTCAGAGAAATAACTGGCCATGGCAGACCATCGAAATGGAAGTGCCCAAGCT GCCAATGGAAAGGCTAGTGCAGCAGGAACTGCCTATTCTATTGATCTGAATGCATTTCAGACCAGAATGAAGACATTTTA TTCACATTGGGATGAACACAAAACTGATCTCTGGGGCTCTTGTGATGCAATTGCTGTGGCATGTCCTCCGCCTTCTGAAG ATCTGCGATACCTGAAATCTACTGCTCTGAACTTGTGGCTGCTTGGATTTGAGTTCCCAGAGACGATTATGGTCTTCACA AAGAAACAAGTCCATATATTGTGCAGCCAAAAGAAGGCATCCATTCTTGAATCAGTCAAAAAACCTGCCAAAGAGGCAGT TGGTGCGGAAATTGTTTTGCATGTCAAGCCTAAGAATGATGATGGAACCACTCTTATGGATTCTATATTTCATGCCATTC GAACTCAGTCAAAGGCTGACGGCGGGGATGTTCCCACTGTTGGTTACATATCAAGAGAGGCTGCTGAAGGGAAACTGCTT GAAACATGGGCTGAAAAATTAAAAAGTTCTAAATTTAATCTTACTGATGTGGCCAATGGGTTATCTATGTTGTTTGCTGC TAAGAATAATGAGGAGCTTACATCTATTAAAAGAGCAGCATACCTGACAACCAGTGTGATGAAGAACTTTGTGGTTTCGA AGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCATTCTACTTTGATGGAGGAGACTGAGAAAGTTATACTTGAA CCTTCTAAAGCTAACTGTAAACTGAAGGCTGAGAATGTTGATATTTGTTATCCCCCAATTTTTCAGAGTGGGGGGGAGTT TGATCTGAGGCCTAGTGCTGTCAGCAATGATGATTTACTTTACTATGACTCTGCCAGTGTGATTATATGTGCTGTGGGGG CTCGGTATAAGAGTTACTGCTCAAACATAGCCAGGACTTTCTTGATTGATGCCATTTCTCTTCAAAGTAAGGCTTATGAG GTTCTTCTGAAGGCCCATGAAGCTGTCATTGGTTCTTTTAAGCCTGGAAATAAATTGAGTTCCGCATACCAAGCTGCAGT TTCTGTTGTGGAAAAGGAAGCTCCTGACTTACTTCCCTTCTTGACAAAGTCTGCTGGAACAGGAATCGGTATTGAGTTTC GAGAGTCAAGTCTGAATCTTAATGCAAAAAATGAGCAGATAGTGAAAGAAGGCATGGTCTTCAATGTTTCACTTGGATTT CAGAACTTGAAGAGTGAGAACAGTAAGTCAAAGAACAAGGTCTTCTCTCTCTTGCTTGCTGACACTGTCATCATAAACAA AGACAAGACAGAAGTAGTGACTTCTATGAGCTCAAAAGCTCTTAAAGATGTGGCGTATTCTTTCAATGAGGATGAAGAGG AAGAGGAAAAGCCTAGTGCAAAATCTGATGCCAATGGTGCAGAGCACTTAATGTCTAAGACAACTCTAAGGTCAGACAAT CATGAAGTTTCAAAAGAGGAACTCAGAAGGCAGCATCAGGCAGAACTTGCACGTCAGAAAAATGAAGAAACTGCAAGGCG TCTTGCTGGTGGCGGAAATGGGGCAGGAGATAACCGTTCCTCTGTGAAGAATTCTTCAGAACTGGTGGCCTACAAGAACA TAAATGACCTTCCTCCTCCCAGAGAAATGATGATTCAGATTGATCAAAAGAATGAAGCAGTTCTCTTGCCCATAAATGGA AGCATGGTTCCTTTTCATGTGGCTTTCATTCGAACAATTAACAGCCAACAGGACACCAACCGCAAGTGCATTATCAGAAT TATTTTTAATGTTCCTGGGACAGCCTTCAATCCTCATGATTCAAATTCAATGAAGTTCCAAGGATCTATATATTTGAAGG AGGCTTCATTCCGCTCTAAGGATCCAAGGCATAGCAGTGAAGTTGTGCAGTCCATTAAAACACTTAGGCGACAAGTTGTA GCCAGGGAATCTGAGAGAGCTGAAAGGGCAACCCTGGTTACCCAGGAGAAACTGCAGCTTGCTAATAACAAATTTAAGCC GATAAGGTTGTCTGACCTCTGGATCCGCCCTGTTTTTGGTGGCCGTGGAAGGAAACTACCGGGTACACTGGAGGGTCATG CGAATGGATTTCGCTACTCTACCACCAGGCAAGATGAGCGTGTGGACATAATGTTTGCCAACATTAAACATGCATTTTTT CAGCCAGCAGAGAATGAAATGATTACACTTCTGCACTTTCATCTGCACAACCACATTATGGTAGGAAATAAAAAGACCAA GGATGTTCAGTTTTATGTTGAGGTAATGGATATGGTACAGAACATTGGAGGTGGGAAAAGATCAGCCTATGACCCTGATG AACTTGAAGAAGAACAGAGAGAGAGAGACCGAAAGAACAAAATCAATGTAGAATTTCAGACCTTTGTGAATAGAGTGAAT GATCTCTGGGGGCAACCACAATTCAATGGACTTGACTTGGAGTTTGATCAACCTCTAAGAGAACTTGGCTTCCCTGGAGT ACCTCATAAATCTTCAGTATTTATTGTTCCTACTTCAGCCTGCCTTGTTGAACTGATAGAGATCCCATTCCTTGTTGTTA CACTAAGTGAGATTGAGATTGTGAATCTAGAGCGAGTTGGGCTTGGGCAGAAGAACTTTGATATGACAATTGTGTTTAAG GACTTCAAGCGGGATGTGCTTAGGATTGATTCTATCCCTTCTACATCACTGGATGGCATCAAGGAGTGGCTTGACACCAC AGACATCAAATATTACGAGAGTAGGCTGAATCTGAACTGGCGTCAGATCCTAAAGACAATCACTGATGACCCTCAAAGCT TTATTGAAGGTGGTGGTTGGGAGTTTCTGAATTTGGAAGCTACTGATTCAGAATCTGATAACTCAGAGGAGTCTGATAAA GGTTACGAACCATCTGATGTGGAGCCGGAGTCTGATTCTGAAGATGAAGATTCTGACAGTGAATCACTTGTTGAGTCTGA TGATGATGATGAGGAGGATGAGGACTCTGAGGTAGATTCAGAGGAAGAGAAGGGAAAGACATGGGAAGAGCTGGAGAGGG AAGCAAGCAATGCAGATAGGGAGAAAGGGAACGAGTATGACAGTGATGAAGATAGGCAGAGAAGGAAGGCGAAAGCCTTT GGTAAGTCACGAGCCGGTGCAAGTAGTAGCATGCCCAAGCGCTCCAAGTTAAGATAGATTTTGTTTATTGTTCTTTGACT GGTTTAGTAGTACAGATGCTTTATGTTGTTGCTGTGGATTGCAGTTCGTGTTTGGACTAATTGTCGTATCATTGTAACTT AGATTTTCGTTTGCATAGCTCAGTATCGGATAGCCCTTGAATCGAATTTATGTTTCCTTGAACGTGGTTTTATCTTTTAT ACAATTGCGGCTATTTTATGTTTCCTGATTAACTTTTAGGGCGAAAGTCGTTGACCTTAGAGAATAAAATAAGTAGCCAA TATATTATTATAATCTCAATGGCTTAATTAATTAAATGGTTGTGATCATTTTTGATTCTGTGTGTTTTTGGTTCTTAAGT GTTTCTTTCTCTGCTAGTATTCTTCTTTTC
CDS sequence (LotjaGi6g1v0051500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACCATCGAAATGGAAGTGCCCAAGCTGCCAATGGAAAGGCTAGTGCAGCAGGAACTGCCTATTCTATTGATCT GAATGCATTTCAGACCAGAATGAAGACATTTTATTCACATTGGGATGAACACAAAACTGATCTCTGGGGCTCTTGTGATG CAATTGCTGTGGCATGTCCTCCGCCTTCTGAAGATCTGCGATACCTGAAATCTACTGCTCTGAACTTGTGGCTGCTTGGA TTTGAGTTCCCAGAGACGATTATGGTCTTCACAAAGAAACAAGTCCATATATTGTGCAGCCAAAAGAAGGCATCCATTCT TGAATCAGTCAAAAAACCTGCCAAAGAGGCAGTTGGTGCGGAAATTGTTTTGCATGTCAAGCCTAAGAATGATGATGGAA CCACTCTTATGGATTCTATATTTCATGCCATTCGAACTCAGTCAAAGGCTGACGGCGGGGATGTTCCCACTGTTGGTTAC ATATCAAGAGAGGCTGCTGAAGGGAAACTGCTTGAAACATGGGCTGAAAAATTAAAAAGTTCTAAATTTAATCTTACTGA TGTGGCCAATGGGTTATCTATGTTGTTTGCTGCTAAGAATAATGAGGAGCTTACATCTATTAAAAGAGCAGCATACCTGA CAACCAGTGTGATGAAGAACTTTGTGGTTTCGAAGCTTGAGAATGTAATTGATGAAGAGAAGAAAGTTTCTCATTCTACT TTGATGGAGGAGACTGAGAAAGTTATACTTGAACCTTCTAAAGCTAACTGTAAACTGAAGGCTGAGAATGTTGATATTTG TTATCCCCCAATTTTTCAGAGTGGGGGGGAGTTTGATCTGAGGCCTAGTGCTGTCAGCAATGATGATTTACTTTACTATG ACTCTGCCAGTGTGATTATATGTGCTGTGGGGGCTCGGTATAAGAGTTACTGCTCAAACATAGCCAGGACTTTCTTGATT GATGCCATTTCTCTTCAAAGTAAGGCTTATGAGGTTCTTCTGAAGGCCCATGAAGCTGTCATTGGTTCTTTTAAGCCTGG AAATAAATTGAGTTCCGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGAAGCTCCTGACTTACTTCCCTTCTTGACAA AGTCTGCTGGAACAGGAATCGGTATTGAGTTTCGAGAGTCAAGTCTGAATCTTAATGCAAAAAATGAGCAGATAGTGAAA GAAGGCATGGTCTTCAATGTTTCACTTGGATTTCAGAACTTGAAGAGTGAGAACAGTAAGTCAAAGAACAAGGTCTTCTC TCTCTTGCTTGCTGACACTGTCATCATAAACAAAGACAAGACAGAAGTAGTGACTTCTATGAGCTCAAAAGCTCTTAAAG ATGTGGCGTATTCTTTCAATGAGGATGAAGAGGAAGAGGAAAAGCCTAGTGCAAAATCTGATGCCAATGGTGCAGAGCAC TTAATGTCTAAGACAACTCTAAGGTCAGACAATCATGAAGTTTCAAAAGAGGAACTCAGAAGGCAGCATCAGGCAGAACT TGCACGTCAGAAAAATGAAGAAACTGCAAGGCGTCTTGCTGGTGGCGGAAATGGGGCAGGAGATAACCGTTCCTCTGTGA AGAATTCTTCAGAACTGGTGGCCTACAAGAACATAAATGACCTTCCTCCTCCCAGAGAAATGATGATTCAGATTGATCAA AAGAATGAAGCAGTTCTCTTGCCCATAAATGGAAGCATGGTTCCTTTTCATGTGGCTTTCATTCGAACAATTAACAGCCA ACAGGACACCAACCGCAAGTGCATTATCAGAATTATTTTTAATGTTCCTGGGACAGCCTTCAATCCTCATGATTCAAATT CAATGAAGTTCCAAGGATCTATATATTTGAAGGAGGCTTCATTCCGCTCTAAGGATCCAAGGCATAGCAGTGAAGTTGTG CAGTCCATTAAAACACTTAGGCGACAAGTTGTAGCCAGGGAATCTGAGAGAGCTGAAAGGGCAACCCTGGTTACCCAGGA GAAACTGCAGCTTGCTAATAACAAATTTAAGCCGATAAGGTTGTCTGACCTCTGGATCCGCCCTGTTTTTGGTGGCCGTG GAAGGAAACTACCGGGTACACTGGAGGGTCATGCGAATGGATTTCGCTACTCTACCACCAGGCAAGATGAGCGTGTGGAC ATAATGTTTGCCAACATTAAACATGCATTTTTTCAGCCAGCAGAGAATGAAATGATTACACTTCTGCACTTTCATCTGCA CAACCACATTATGGTAGGAAATAAAAAGACCAAGGATGTTCAGTTTTATGTTGAGGTAATGGATATGGTACAGAACATTG GAGGTGGGAAAAGATCAGCCTATGACCCTGATGAACTTGAAGAAGAACAGAGAGAGAGAGACCGAAAGAACAAAATCAAT GTAGAATTTCAGACCTTTGTGAATAGAGTGAATGATCTCTGGGGGCAACCACAATTCAATGGACTTGACTTGGAGTTTGA TCAACCTCTAAGAGAACTTGGCTTCCCTGGAGTACCTCATAAATCTTCAGTATTTATTGTTCCTACTTCAGCCTGCCTTG TTGAACTGATAGAGATCCCATTCCTTGTTGTTACACTAAGTGAGATTGAGATTGTGAATCTAGAGCGAGTTGGGCTTGGG CAGAAGAACTTTGATATGACAATTGTGTTTAAGGACTTCAAGCGGGATGTGCTTAGGATTGATTCTATCCCTTCTACATC ACTGGATGGCATCAAGGAGTGGCTTGACACCACAGACATCAAATATTACGAGAGTAGGCTGAATCTGAACTGGCGTCAGA TCCTAAAGACAATCACTGATGACCCTCAAAGCTTTATTGAAGGTGGTGGTTGGGAGTTTCTGAATTTGGAAGCTACTGAT TCAGAATCTGATAACTCAGAGGAGTCTGATAAAGGTTACGAACCATCTGATGTGGAGCCGGAGTCTGATTCTGAAGATGA AGATTCTGACAGTGAATCACTTGTTGAGTCTGATGATGATGATGAGGAGGATGAGGACTCTGAGGTAGATTCAGAGGAAG AGAAGGGAAAGACATGGGAAGAGCTGGAGAGGGAAGCAAGCAATGCAGATAGGGAGAAAGGGAACGAGTATGACAGTGAT GAAGATAGGCAGAGAAGGAAGGCGAAAGCCTTTGGTAAGTCACGAGCCGGTGCAAGTAGTAGCATGCCCAAGCGCTCCAA GTTAAGATAG
Protein sequence (LotjaGi6g1v0051500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADHRNGSAQAANGKASAAGTAYSIDLNAFQTRMKTFYSHWDEHKTDLWGSCDAIAVACPPPSEDLRYLKSTALNLWLLG FEFPETIMVFTKKQVHILCSQKKASILESVKKPAKEAVGAEIVLHVKPKNDDGTTLMDSIFHAIRTQSKADGGDVPTVGY ISREAAEGKLLETWAEKLKSSKFNLTDVANGLSMLFAAKNNEELTSIKRAAYLTTSVMKNFVVSKLENVIDEEKKVSHST LMEETEKVILEPSKANCKLKAENVDICYPPIFQSGGEFDLRPSAVSNDDLLYYDSASVIICAVGARYKSYCSNIARTFLI DAISLQSKAYEVLLKAHEAVIGSFKPGNKLSSAYQAAVSVVEKEAPDLLPFLTKSAGTGIGIEFRESSLNLNAKNEQIVK EGMVFNVSLGFQNLKSENSKSKNKVFSLLLADTVIINKDKTEVVTSMSSKALKDVAYSFNEDEEEEEKPSAKSDANGAEH LMSKTTLRSDNHEVSKEELRRQHQAELARQKNEETARRLAGGGNGAGDNRSSVKNSSELVAYKNINDLPPPREMMIQIDQ KNEAVLLPINGSMVPFHVAFIRTINSQQDTNRKCIIRIIFNVPGTAFNPHDSNSMKFQGSIYLKEASFRSKDPRHSSEVV QSIKTLRRQVVARESERAERATLVTQEKLQLANNKFKPIRLSDLWIRPVFGGRGRKLPGTLEGHANGFRYSTTRQDERVD IMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNIGGGKRSAYDPDELEEEQRERDRKNKIN VEFQTFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIEIPFLVVTLSEIEIVNLERVGLG QKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIEGGGWEFLNLEATD SESDNSEESDKGYEPSDVEPESDSEDEDSDSESLVESDDDDEEDEDSEVDSEEEKGKTWEELEREASNADREKGNEYDSD EDRQRRKAKAFGKSRAGASSSMPKRSKLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 1068 | 1056 | 0.0 | ||
| PANTHER | 13 | 1068 | 1056 | 0.0 | – | |
| Gene3D | 24 | 196 | 173 | 1.9E-64 | ||
| SMART | 25 | 192 | 168 | 4.0E-76 | ||
| Pfam | 25 | 190 | 166 | 3.3E-50 | ||
| Gene3D | 197 | 458 | 262 | 6.0E-64 | ||
| SUPERFAMILY | 200 | 464 | 265 | 8.11E-31 | ||
| CDD | 204 | 444 | 241 | 4.77597E-99 | ||
| Pfam | 207 | 436 | 230 | 7.3E-28 | ||
| MobiDBLite | 460 | 535 | 76 | - | – | |
| MobiDBLite | 485 | 516 | 32 | - | – | |
| Gene3D | 531 | 657 | 127 | 4.1E-34 | – | |
| SMART | 556 | 710 | 155 | 2.7E-80 | ||
| Pfam | 556 | 710 | 155 | 3.8E-48 | ||
| Gene3D | 658 | 820 | 163 | 3.9E-62 | – | |
| Gene3D | 828 | 959 | 132 | 6.5E-54 | ||
| SMART | 835 | 925 | 91 | 9.5E-37 | ||
| Pfam | 838 | 923 | 86 | 1.6E-16 | ||
| MobiDBLite | 959 | 1069 | 111 | - | – | |
| MobiDBLite | 979 | 1011 | 33 | - | – | |
| MobiDBLite | 1012 | 1048 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | FACT complex | An abundant nuclear complex, which was originally identified in mammalian systems as a factor required for transcription elongation on chromatin templates. The FACT complex has been shown to destablilize the interaction between the H2A/H2B dimer and the H3/H4 tetramer of the nucleosome, thus reorganizing the structure of the nucleosome. In this way, the FACT complex may play a role in DNA replication and other processes that traverse the chromatin, as well as in transcription elongation. FACT is composed of two proteins that are evolutionarily conserved in all eukaryotes and homologous to mammalian Spt16 and SSRP1. In metazoans, the SSRP1 homolog contains an HMG domain; however in fungi and protists, it does not. For example, in S. cerevisiae the Pob3 protein is homologous to SSRP1, but lacks the HMG chromatin binding domain. Instead, the yFACT complex of Spt16p and Pob3p, binds to nucleosomes where multiple copies of the HMG-domain containing protein Nhp6p have already bound, but Nhp6p does not form a stable complex with the Spt16p/Pob3p heterodimer. |
Expression pattern of LotjaGi6g1v0051500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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