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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033825
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.031s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2776600.1
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1| chr1 31710860 31715210 +
2 domain predictions
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Lj6g3v0388030.1
n.a. n.a. chr6 3531782 3552499 +
2 domain predictions
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Lj6g3v0388030.2
n.a. n.a. chr6 3531782 3552499 +
2 domain predictions
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Lj6g3v0388060.1
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356539779|ref|XP_003538371.1| chr6 3533098 3537546 -
2 domain predictions
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Lj6g3v0388070.1
n.a. n.a. chr6 3533139 3535795 +
2 domain predictions
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Lj6g3v0389080.2
n.a. PREDICTED: FACT complex subunit SPT16-like [Glycine max] gi|356569402|ref|XP_003552890.1| chr6 3549267 3554027 -
2 domain predictions
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LotjaGi1g1v0481300.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460332 99464115 +
2 domain predictions
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LotjaGi1g1v0481300.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0481300 LjG1.1_chr1 99460373 99464115 +
2 domain predictions
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LotjaGi6g1v0051400.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211120 9216841 -
2 domain predictions
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LotjaGi6g1v0051400.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215140 -
2 domain predictions
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LotjaGi6g1v0051400.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7H1L5|A0A1J7H1L5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051400 LjG1.1_chr6 9211869 9215189 -
2 domain predictions
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LotjaGi6g1v0051500.1
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240360 9243974 -
2 domain predictions
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LotjaGi6g1v0051500.2
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240392 9245461 -
2 domain predictions
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LotjaGi6g1v0051500.3
n.a. FACT complex subunit SPT16; TAIR: AT4G10710.1 global transcription factor C; Swiss-Prot: sp|O82491|SPT16_ARATH FACT complex subunit SPT16; TrEMBL-Plants: tr|A0A1J7IIX4|A0A1J7IIX4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0051500 LjG1.1_chr6 9240765 9243974 -
2 domain predictions
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