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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035985
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We have found 30 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.289s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0025600.1
n.a. Adenylyltransferase and sulfurtransferase MOCS3; TAIR: AT5G55130.1 co-factor for nitrate, reductase and xanthine dehydrogenase 5; Swiss-Prot: sp|Q9ZNW0|MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3; TrEMBL-Plants: tr|G7K8M6|G7K8M6_MEDTR Adenylyltransferase and sulfurtransferase MOCS3; Found in the gene: LotjaGi1g1v0025600 LjG1.1_chr1 3083818 3089394 +
2 domain predictions
1 GO term
LotjaGi1g1v0025600.2
n.a. Adenylyltransferase and sulfurtransferase MOCS3; TAIR: AT5G55130.1 co-factor for nitrate, reductase and xanthine dehydrogenase 5; Swiss-Prot: sp|Q9ZNW0|MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3; TrEMBL-Plants: tr|I1JJC5|I1JJC5_SOYBN Adenylyltransferase and sulfurtransferase MOCS3; Found in the gene: LotjaGi1g1v0025600 LjG1.1_chr1 3085477 3089020 +
2 domain predictions
1 GO term
LotjaGi1g1v0025600.3
n.a. Adenylyltransferase and sulfurtransferase MOCS3; TAIR: AT5G55130.1 co-factor for nitrate, reductase and xanthine dehydrogenase 5; Swiss-Prot: sp|Q9ZNW0|MOCS3_ARATH Adenylyltransferase and sulfurtransferase MOCS3; TrEMBL-Plants: tr|I1JJC5|I1JJC5_SOYBN Adenylyltransferase and sulfurtransferase MOCS3; Found in the gene: LotjaGi1g1v0025600 LjG1.1_chr1 3085516 3089020 +
2 domain predictions
1 GO term
LotjaGi1g1v0095800.1
n.a. Adenylyltransferase and sulfurtransferase MOCS3; TAIR: AT5G37530.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P36101|TCD2_YEAST tRNA threonylcarbamoyladenosine dehydratase 2; TrEMBL-Plants: tr|K7M8D6|K7M8D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0095800 LjG1.1_chr1 14493621 14501455 -
2 domain predictions
1 GO term
LotjaGi1g1v0095800.2
n.a. Adenylyltransferase and sulfurtransferase MOCS3; TAIR: AT5G37530.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|O13861|TCD_SCHPO tRNA threonylcarbamoyladenosine dehydratase; TrEMBL-Plants: tr|K7M8D6|K7M8D6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0095800 LjG1.1_chr1 14493973 14501280 -
2 domain predictions
1 GO term
LotjaGi1g1v0116200.1
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|K7KA83|K7KA83_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249437 18259265 +
2 domain predictions
1 GO term
LotjaGi1g1v0116200.2
n.a. Ubiquitin activating enzyme E1; TAIR: AT5G06460.1 ubiquitin activating enzyme 2; Swiss-Prot: sp|P92974|UBE12_ARATH Ubiquitin-activating enzyme E1 2; TrEMBL-Plants: tr|G7KEA9|G7KEA9_MEDTR Ubiquitin-activating enzyme E1 1; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249881 18257704 +
2 domain predictions
1 GO term
LotjaGi1g1v0116200.3
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|G7KEA8|G7KEA8_MEDTR Ubiquitin-activating enzyme E1 1; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249902 18257704 +
2 domain predictions
1 GO term
LotjaGi1g1v0116200.4
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|G7KEA8|G7KEA8_MEDTR Ubiquitin-activating enzyme E1 1; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249904 18257704 +
2 domain predictions
1 GO term
LotjaGi1g1v0116200.5
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|G7KEA8|G7KEA8_MEDTR Ubiquitin-activating enzyme E1 1; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249918 18257704 +
2 domain predictions
1 GO term
LotjaGi1g1v0116200.6
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|G7KEA9|G7KEA9_MEDTR Ubiquitin-activating enzyme E1 1; Found in the gene: LotjaGi1g1v0116200 LjG1.1_chr1 18249932 18257704 +
2 domain predictions
1 GO term
LotjaGi1g1v0275000_LC.1
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G21470.1 SUMO-activating enzyme 2; Swiss-Prot: sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2; TrEMBL-Plants: tr|V7ALR1|V7ALR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0275000_LC LjG1.1_chr1 67360832 67363545 +
2 domain predictions
1 GO term
LotjaGi1g1v0338800.1
n.a. Ubiquitin-like modifier-activating enzyme 5; TAIR: AT1G05350.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|O23034|UBA5_ARATH Ubiquitin-like modifier-activating enzyme 5; TrEMBL-Plants: tr|I3S0U0|I3S0U0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0338800 LjG1.1_chr1 79926320 79931604 -
2 domain predictions
1 GO term
LotjaGi3g1v0061900.1
n.a. SUMO-activating enzyme 2; TAIR: AT2G21470.1 SUMO-activating enzyme 2; Swiss-Prot: sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2; TrEMBL-Plants: tr|I1LVC3|I1LVC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0061900 LjG1.1_chr3 6542298 6554959 +
2 domain predictions
1 GO term
LotjaGi3g1v0061900.2
n.a. SUMO-activating enzyme 2; TAIR: AT2G21470.1 SUMO-activating enzyme 2; Swiss-Prot: sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2; TrEMBL-Plants: tr|I1LVC3|I1LVC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0061900 LjG1.1_chr3 6544046 6550608 +
2 domain predictions
1 GO term
LotjaGi3g1v0323700_LC.1
n.a. Adenylyltransferase and sulfurtransferase; TAIR: AT2G21470.1 SUMO-activating enzyme 2; Swiss-Prot: sp|Q9SJT1|SAE2_ARATH SUMO-activating enzyme subunit 2; TrEMBL-Plants: tr|V7ALR1|V7ALR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0323700_LC LjG1.1_chr3 68921343 68925044 -
2 domain predictions
1 GO term
LotjaGi3g1v0466500.1
n.a. NEDD8-activating enzyme E1 regulatory subunit; TAIR: AT1G05180.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P42744|AXR1_ARATH NEDD8-activating enzyme E1 regulatory subunit AXR1; TrEMBL-Plants: tr|I3SW23|I3SW23_LOTJA NEDD8-activating enzyme E1 regulatory subunit; Found in the gene: LotjaGi3g1v0466500 LjG1.1_chr3 88196500 88206454 +
2 domain predictions
1 GO term
LotjaGi3g1v0466500.2
n.a. NEDD8-activating enzyme E1 regulatory subunit; TAIR: AT1G05180.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P42744|AXR1_ARATH NEDD8-activating enzyme E1 regulatory subunit AXR1; TrEMBL-Plants: tr|I3SW23|I3SW23_LOTJA NEDD8-activating enzyme E1 regulatory subunit; Found in the gene: LotjaGi3g1v0466500 LjG1.1_chr3 88196507 88204082 +
2 domain predictions
1 GO term
LotjaGi3g1v0466500.3
n.a. NEDD8-activating enzyme E1 regulatory subunit; TAIR: AT1G05180.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P42744|AXR1_ARATH NEDD8-activating enzyme E1 regulatory subunit AXR1; TrEMBL-Plants: tr|I3SW23|I3SW23_LOTJA NEDD8-activating enzyme E1 regulatory subunit; Found in the gene: LotjaGi3g1v0466500 LjG1.1_chr3 88197478 88202498 +
2 domain predictions
1 GO term
LotjaGi3g1v0466500.4
n.a. NEDD8-activating enzyme E1 regulatory subunit; TAIR: AT1G05180.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|P42744|AXR1_ARATH NEDD8-activating enzyme E1 regulatory subunit AXR1; TrEMBL-Plants: tr|I3SW23|I3SW23_LOTJA NEDD8-activating enzyme E1 regulatory subunit; Found in the gene: LotjaGi3g1v0466500 LjG1.1_chr3 88197478 88202498 +
2 domain predictions
1 GO term
LotjaGi3g1v0547800.1
n.a. Ubiquitin-like modifier-activating enzyme atg7; TAIR: AT5G45900.1 ThiF family protein; Swiss-Prot: sp|Q94CD5|ATG7_ARATH Ubiquitin-like modifier-activating enzyme atg7; TrEMBL-Plants: tr|A0A0B2RJ97|A0A0B2RJ97_GLYSO Ubiquitin-like modifier-activating enzyme atg7; Found in the gene: LotjaGi3g1v0547800 LjG1.1_chr3 96449503 96457592 -
2 domain predictions
1 GO term
LotjaGi3g1v0547800.2
n.a. Ubiquitin-like modifier-activating enzyme atg7; TAIR: AT5G45900.1 ThiF family protein; Swiss-Prot: sp|Q94CD5|ATG7_ARATH Ubiquitin-like modifier-activating enzyme atg7; TrEMBL-Plants: tr|A0A0B2RJ97|A0A0B2RJ97_GLYSO Ubiquitin-like modifier-activating enzyme atg7; Found in the gene: LotjaGi3g1v0547800 LjG1.1_chr3 96453797 96457352 -
2 domain predictions
1 GO term
LotjaGi3g1v0547800.3
n.a. Ubiquitin-like modifier-activating enzyme atg7; TAIR: AT5G45900.1 ThiF family protein; Swiss-Prot: sp|Q94CD5|ATG7_ARATH Ubiquitin-like modifier-activating enzyme atg7; TrEMBL-Plants: tr|A0A0B2RJ97|A0A0B2RJ97_GLYSO Ubiquitin-like modifier-activating enzyme atg7; Found in the gene: LotjaGi3g1v0547800 LjG1.1_chr3 96453797 96457352 -
2 domain predictions
1 GO term
LotjaGi4g1v0069200.1
n.a. SUMO-activating enzyme subunit 1; TAIR: AT4G24940.1 SUMO-activating enzyme 1A; Swiss-Prot: sp|Q8VY78|SAE1A_ARATH SUMO-activating enzyme subunit 1A; TrEMBL-Plants: tr|A0A1J7HZ69|A0A1J7HZ69_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0069200 LjG1.1_chr4 8739365 8743486 -
2 domain predictions
1 GO term
LotjaGi4g1v0352900.1
n.a. NEDD8-activating enzyme E1 catalytic subunit; TAIR: AT5G19180.1 E1 C-terminal related 1; Swiss-Prot: sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit; TrEMBL-Plants: tr|I1KNA2|I1KNA2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0352900 LjG1.1_chr4 73143401 73147855 +
2 domain predictions
1 GO term
LotjaGi4g1v0418200.1
n.a. SUMO-activating enzyme subunit 1; TAIR: AT4G24940.1 SUMO-activating enzyme 1A; Swiss-Prot: sp|Q8VY78|SAE1A_ARATH SUMO-activating enzyme subunit 1A; TrEMBL-Plants: tr|I3SJS2|I3SJS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0418200 LjG1.1_chr4 79362362 79366164 +
2 domain predictions
1 GO term
LotjaGi6g1v0126000.1
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|A0A0L9VCA7|A0A0L9VCA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126000 LjG1.1_chr6 32512343 32520728 +
2 domain predictions
1 GO term
LotjaGi6g1v0126000.2
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|I1MZW3|I1MZW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126000 LjG1.1_chr6 32512820 32519512 +
2 domain predictions
1 GO term
LotjaGi6g1v0126000.3
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|A0A0L9VCA7|A0A0L9VCA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126000 LjG1.1_chr6 32512820 32519512 +
2 domain predictions
1 GO term
LotjaGi6g1v0126000.4
n.a. Ubiquitin activating enzyme E1; TAIR: AT2G30110.1 ubiquitin-activating enzyme 1; Swiss-Prot: sp|P93028|UBE11_ARATH Ubiquitin-activating enzyme E1 1; TrEMBL-Plants: tr|I1MZW3|I1MZW3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0126000 LjG1.1_chr6 32512843 32519512 +
2 domain predictions
1 GO term