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LotjaGi3g1v0547800.3

Overview

Field Value
Gene ID LotjaGi3g1v0547800
Transcript ID LotjaGi3g1v0547800.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin-like modifier-activating enzyme atg7; TAIR: AT5G45900.1 ThiF family protein; Swiss-Prot: sp|Q94CD5|ATG7_ARATH Ubiquitin-like modifier-activating enzyme atg7; TrEMBL-Plants: tr|A0A0B2RJ97|A0A0B2RJ97_GLYSO Ubiquitin-like modifier-activating enzyme atg7; Found in the gene: LotjaGi3g1v0547800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:96453797..96457352) extracted from Lotus japonicus Gifu genome v1.2.

GAAACATCAAACAAGGAAACTCTACTTCAATTCGCCCCGATGCAGAGCTCCGTCGATGAAAGCTTCTGGCACAGATTGTC TTCTTTGAAACTCAACAAGCTTGGCATTGATGATTCTCCATTACCCATCATTGGTTCTTCTCTTCACTTCCATCTTTACA CTCTTATAGTTAGATTTGGTTAATTCTCTTTTGAATTGTGCGTTTGGATACTAGTGTAATGGCAATTAGACAATTAGTCT TCAAGTAATGAATATCCAAACATAGCCTAGAACTGCAATCATTGATTCATGTTATAATGCTCTGACTTGATTGCAGGTTT CTATGCACCTTGCTCACACTCTCAAGTATCAAACCATTTAACTCTATTAGCTGAGTCTTTACCTTCTGAATTGAGTGATG AGGCATCATTGATGCCGGAACCGAGCCGCGGCAACAGGAACTGGTGCTCCGTTCCGGGGATACTTTACAACACTAACACT GTGGAAAGCTTCCACGCACTTGATAAAATGAGCCTGTTGAAGGAAGAGGCGCGAAAGGTAAACCATTCACAAGATGAGAT AAATGCAGATGATCAAAATTGTTAATCTCACATAAGTTTACCACTTGTTGTTATTTTAGATATGGGATGACATTCTTACT GGAAAAGCTGTGGAGGACTGTTCAGTGCTTTCAAGGTTCCTTCTTATTTCTTTTGCAGACTTGAAAAAGTGGAGTTTCCA CTACTGGTTTGCTTTCCCTGCTCTCATGCTTGATCCTCCTGCAACTGTGGTGAATTTAAGGCCAGCTACTCAGTGGCTGA GCACGGAAGAGGTGCGCTGAGTTTCATTGTTTTAAGTTAGTGGTGTTTAATTGTATGTCCTTTATTTTCATTGCTATTGA CACCTGAAATCGCAGGCAGAATCCCTCTCTGCAGCCTGTAACAAGTGGCGTGGCTCAAAATCAACAGCAGGTATAGATCT CTTAATTTCCTCAAACAATAGGAAATAATGTCATTTATAGATTTTTCTGCTTCCTTTCAATTTGACCTGCTTTGCCTAAT AGTAAAGAATATGTGGCAGATGTCCCATTTTTCGTAGTAACTATAGATCCCAACTCACATGCTAGTAGTGTTAGGCTTCT AAAGGACTGGGAAGGTTGTCAGAACGATTCTCACAAGGTGTGTAACTCGAAATCTAGTTAAAATAATTAAATGCAATCTT TGTTAAATTCCTTTTTTTCAAATATACAACTCTTTGGATGTGAATCTGTAGATGTCTTTTATGAAATTCTCTAGATTCTA TTGGCAGATACTCTTTGGATTTTATGACCCGTGTCATCTCCCAAATAATCCCGGGTGGCCTCTACGTAACTTCTTAGCAC TTATTTCTGCGAGGTGGAATCTGAAGTCTGTTCAATTCTTCTGCTACAGAGAGAACCGCGGTTTTGCAGATATGGGGTTG TCTCTTATTGGTGAAGCATTGATAACAATTCCACTAGGTAGAGCTGCATTAATTGTGTAACAGTTGTATTGTTGATGTCT CTTTCTTTTTAGTTTGTTAGGTTTCTAATTTCCAAGGCGTGACTATACAGGGTGGAAAGATGTTGTGCCCAATGCTGTCG GATGGGAACATCATAAGGGGAGAAAAGCACCAAGGTGCATTAGTCTTGCACAGTCCATGGATCCAAGCAGGTTCTTGACT GCATTGTTTTCTTCAGTCTATGCCCCCGACTAATGCTACTTATTTTATGCGCATATCTATTATTTGCATTGTAGTTTTTA AAATGTGTTTTTACAGGTTGGCAGTATCTGCTGCAGATTTGAATTTAAAGCTTATGAGATGGCGTGCTTTGCCTTCTTTA AACTTGAGTGCCTTGTCTTCCGTCAAGTGTCTTCTCCTTGGAGCCGGCACGCTTGGATGCCAGGTTGCCCGCATGCTTAT GGTGAGTATTGTGGAAGTCCTATTATTCTTAGGTTTAATTACATTAGTTCTTCAATTCATGATAACTGATAAAACATGTT GTAGGCATGGGGTGTCCGAAAAATTACTCTACTTGACAATGGCAGGGTGGCTATGTCTAACCCATTGAGGCAGTCTCTTT ATACTCTGGATAACTGTCTTAATGGTGGTGAATTTAAAGCTACGGCGGCAGTTGAAAGTCTCAAACGGATATTTCCGGCA GTGGTAAAAATCATCAATTCCTAACACTTCACGTGATGTTTAACCCAATAACCACATTTTTCACATAACTGTGCTTTTTG TTCCTTTGCAGGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAATAAATAGCCAGGAACAGGATAGC GTGCTCGATGATTGTAGACGCTTACGCGATTTGATTGATGCTCATGATGCAGTTTTTTTATTGACCGATACAAGAGAAAG TCGGTGGCTCCCGACACTTCTCTGTGCCAATACTAACAAGGTTGATCTGTTTTCACTCTTAAATGGCATGCATGTCACTA TTATATCACTGCTTAACATGTGTTTCACATTTTTAACTATTATGATTGTTATCTCATCAATAAATTGGTATCCTTGACTA ACATGAACTTATCTATTTGCAGATTACCATTACTGCAGCTCTAGGGTTTGATAGTTTCTTGGTTATGCGTCATGGAGCTG GTCCTTTCAGTCACGCCCACGACTTCAGTGCTGGAACTACTAATTCTTCATCTGCTGCTGATATGTGCATAAATAACGCT AATGGAAAGCATAGACTGGGCTGTTATTTCTGCAACGATGTTGTTGCACCAACTGATGTAATTTCCATGCATGCAATATC TGTGGTATTTGAACTGATATTACATATATCTCTAATTCGAACTGGCTTTTTGCAGTCAACCTCCAACCGCACTTTGGACC AGCAATGTACTGTGACCCGACCGGGGCTGGCTCCCATTGCTTCAGCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCAT CACCCTCAAGGGTAATTCTGCAAATTGATTTTATGCGTCGTAATTTTGAGGCTTTAAACTAGAGTCAGAGATAAAAATTC AACTAATTTACTCTATTTATCCAGCATGATATTGAGAACTTGACTACATATTTTCAGGATATTAGCAGAAGCTGATATTG GCAATGGTGTGACTGGAGCTAATGAGCAACCTCTTGGTATTTTACCTCATCAGATCCGTGGTTCCCTTTCTCAATTTTCT CAAATGAACCTTGTAGGTTACTCCTCCACCAGCTGCACGGCTTGTTGCGATACAGTAAGTCTTGTTGATGAGTGGTGTCT GTTTTATTTGATAATGCTTCTGCAATTAATTAGTTCTGTATGCTTCATCGTTCTCATTTTTGTTCATCCCCTTTATTTTG TAAAACTGCAATCATTCAGGTTGTATCAGAGTACAGAAACCGAGGAATGGAGGTCGTACTTCAAGCAATTAATCATCCTA CCTACCTAGAAGATCTCACTGGACTGACAGAGTTGATGAAATCAGTCTCCTCATTCTCATTGGATTTTGACAAGGAGCTA GATGATGAAGATGAGGAAGACTTTGTTGAAATTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0547800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGAGCTCCGTCGATGAAAGCTTCTGGCACAGATTGTCTTCTTTGAAACTCAACAAGCTTGGCATTGATGATTCTCC ATTACCCATCATTGGTTTCTATGCACCTTGCTCACACTCTCAAGTATCAAACCATTTAACTCTATTAGCTGAGTCTTTAC CTTCTGAATTGAGTGATGAGGCATCATTGATGCCGGAACCGAGCCGCGGCAACAGGAACTGGTGCTCCGTTCCGGGGATA CTTTACAACACTAACACTGTGGAAAGCTTCCACGCACTTGATAAAATGAGCCTGTTGAAGGAAGAGGCGCGAAAGATATG GGATGACATTCTTACTGGAAAAGCTGTGGAGGACTGTTCAGTGCTTTCAAGGTTCCTTCTTATTTCTTTTGCAGACTTGA AAAAGTGGAGTTTCCACTACTGGTTTGCTTTCCCTGCTCTCATGCTTGATCCTCCTGCAACTGTGGTGAATTTAAGGCCA GCTACTCAGTGGCTGAGCACGGAAGAGGCAGAATCCCTCTCTGCAGCCTGTAACAAGTGGCGTGGCTCAAAATCAACAGC AGATCCCAACTCACATGCTAGTAGTGTTAGGCTTCTAAAGGACTGGGAAGGTTGTCAGAACGATTCTCACAAGATACTCT TTGGATTTTATGACCCGTGTCATCTCCCAAATAATCCCGGGTGGCCTCTACGTAACTTCTTAGCACTTATTTCTGCGAGG TGGAATCTGAAGTCTGTTCAATTCTTCTGCTACAGAGAGAACCGCGGTTTTGCAGATATGGGGTTGTCTCTTATTGGTGA AGCATTGATAACAATTCCACTAGGGTGGAAAGATGTTGTGCCCAATGCTGTCGGATGGGAACATCATAAGGGGAGAAAAG CACCAAGGTGCATTAGTCTTGCACAGTCCATGGATCCAAGCAGGTTGGCAGTATCTGCTGCAGATTTGAATTTAAAGCTT ATGAGATGGCGTGCTTTGCCTTCTTTAAACTTGAGTGCCTTGTCTTCCGTCAAGTGTCTTCTCCTTGGAGCCGGCACGCT TGGATGCCAGGTTGCCCGCATGCTTATGGCATGGGGTGTCCGAAAAATTACTCTACTTGACAATGGCAGGGTGGCTATGT CTAACCCATTGAGGCAGTCTCTTTATACTCTGGATAACTGTCTTAATGGTGGTGAATTTAAAGCTACGGCGGCAGTTGAA AGTCTCAAACGGATATTTCCGGCAGTGGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAATAAATAG CCAGGAACAGGATAGCGTGCTCGATGATTGTAGACGCTTACGCGATTTGATTGATGCTCATGATGCAGTTTTTTTATTGA CCGATACAAGAGAAAGTCGGTGGCTCCCGACACTTCTCTGTGCCAATACTAACAAGATTACCATTACTGCAGCTCTAGGG TTTGATAGTTTCTTGGTTATGCGTCATGGAGCTGGTCCTTTCAGTCACGCCCACGACTTCAGTGCTGGAACTACTAATTC TTCATCTGCTGCTGATATGTGCATAAATAACGCTAATGGAAAGCATAGACTGGGCTGTTATTTCTGCAACGATGTTGTTG CACCAACTGATTCAACCTCCAACCGCACTTTGGACCAGCAATGTACTGTGACCCGACCGGGGCTGGCTCCCATTGCTTCA GCCCTTGCAGTTGAACTTTTAGTAGGGATTTTGCATCACCCTCAAGGGATATTAGCAGAAGCTGATATTGGCAATGGTGT GACTGGAGCTAATGAGCAACCTCTTGGTATTTTACCTCATCAGATCCGTGGTTCCCTTTCTCAATTTTCTCAAATGAACC TTGTAGGTTACTCCTCCACCAGCTGCACGGCTTGTTGCGATACAGTTGTATCAGAGTACAGAAACCGAGGAATGGAGGTC GTACTTCAAGCAATTAATCATCCTACCTACCTAGAAGATCTCACTGGACTGACAGAGTTGATGAAATCAGTCTCCTCATT CTCATTGGATTTTGACAAGGAGCTAGATGATGAAGATGAGGAAGACTTTGTTGAAATTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0547800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQSSVDESFWHRLSSLKLNKLGIDDSPLPIIGFYAPCSHSQVSNHLTLLAESLPSELSDEASLMPEPSRGNRNWCSVPGI LYNTNTVESFHALDKMSLLKEEARKIWDDILTGKAVEDCSVLSRFLLISFADLKKWSFHYWFAFPALMLDPPATVVNLRP ATQWLSTEEAESLSAACNKWRGSKSTADPNSHASSVRLLKDWEGCQNDSHKILFGFYDPCHLPNNPGWPLRNFLALISAR WNLKSVQFFCYRENRGFADMGLSLIGEALITIPLGWKDVVPNAVGWEHHKGRKAPRCISLAQSMDPSRLAVSAADLNLKL MRWRALPSLNLSALSSVKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDNCLNGGEFKATAAVE SLKRIFPAVEAEGIVMAIPMPGHPINSQEQDSVLDDCRRLRDLIDAHDAVFLLTDTRESRWLPTLLCANTNKITITAALG FDSFLVMRHGAGPFSHAHDFSAGTTNSSSAADMCINNANGKHRLGCYFCNDVVAPTDSTSNRTLDQQCTVTRPGLAPIAS ALAVELLVGILHHPQGILAEADIGNGVTGANEQPLGILPHQIRGSLSQFSQMNLVGYSSTSCTACCDTVVSEYRNRGMEV VLQAINHPTYLEDLTGLTELMKSVSSFSLDFDKELDDEDEEDFVEI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10953
1 679 679 9.4E-237 –
PANTHER
PTHR10953:SF3
1 679 679 9.4E-237
IPR006285
Gene3D
G3DSA:3.40.140.70
2 300 299 2.2E-98
IPR042522
Pfam
PF16420
2 304 303 1.6E-86
IPR032197
TIGRFAM
TIGR01381
2 679 678 3.2E-266
IPR006285
Gene3D
G3DSA:3.40.140.100
149 272 124 2.2E-98
IPR042523
Gene3D
G3DSA:3.40.50.720
303 684 382 3.9E-149 –
Pfam
PF00899
330 621 292 1.4E-40
IPR000594
SUPERFAMILY
SSF69572
330 652 323 1.83E-42
IPR035985
CDD
cd01486
338 657 320 1.06725E-180 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0006914
Biological process Autophagy The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
Subterm of
GO:0008641
Molecular function Ubiquitin-like modifier activating enzyme activity Catalysis of the activation of small proteins, such as ubiquitin or ubiquitin-like proteins, through the formation of an ATP-dependent high-energy thiolester bond.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0547800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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