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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0108600 |
| Transcript ID | LotjaGi3g1v0108600.6 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat domain protein, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13397147..13399823) extracted from Lotus japonicus Gifu genome v1.2.
ATCCGCCATTACCAAATCTCATGGCGGAATTCTAGCAAGCCGCCATGGCCGATATTCCGCCATATGCCATAATATTTGAT AAATATGGTCAGTTTTTGCCATTAACAACACTGATAAATATAGGATTTTATTGTTTTGCATGGAGGAAATTCCTTTAATG CGTCATTTTCTATAATTGAACCCCTCTTAGTGGGATAATGGTTGGTTTTTATCGTTAATTAGTGCATGCGTGTTGATACT TTGTCTCACATGGAGATATTTTCTTACGGTTTTATTCTGCTGTTACAGACCACTTCACTTGTGTGTGGCAACATGGAATG TTGCTGTTGTGAAGAGATGGGTGGAAGTTGCAACTCCCGATGAGATCGCTGAAGCAATTGACATACCAAGTCCTATTGGC ACTGCCTTGTGCATGGCAGCTGCTTCTAAGAAAGATCATGAAAGTGGTATCCAAAACTTCATTGCTTCATAATAATTTTA ACATTTGGCTATTTTTTTATTGAGCTACTACTTTTTTATTTACTGCAAAATTTGGTGTGGTTTTCTTTCTAATAGATTTA CTAAACTCATGCCAATGAAGTTTCTTAAAACAAACCAAGTTGTTAAGAGATTGTAACTGCATGAGTTTGAGAGCTGTAAT GTTAGTCGTTCTTAATCACCATCACCACTATGATGGTTCAAGAAATAAATATCCAAGGTTTGTCTAGAAATCGTTGAATA TTTACTGCATGTCAATTTCAAGGGTGTAGATAGGAACTAGAGAAACACAGTTGTAGAGGGATAAGGAATTCTTCAGTGCA GGGAAAACTAACAACAAAGTCGGAGAGAAAAATTAGGAATTCGTTGGATCCGGGGTTGGGTCTCGTGACCAGGTTCATAA TTTCAACGTTTTAGATTCTTTTTTTTCTTTTTTCTTTTAAAACTGGTTCAAGAATGTCGTTTCAACTATTTTTCCTAGAA ATTAGGGAGTGAGACATTTAATTTCATTAAAAACAAGCCTAAAAATTGCTATTGCTGCCCACATTTGTTTTCTTCTTCTG TTTTTCACCGTTTCACTTATTCACGCAGCCTCTCTGCCTCCTTTTGTTATTTTAACATGATTATGATGTGCACCGGAGTT GGAGTACAATCTATATGTTAGGTTGTTTATTTACTAAGATGATTTTGATGATAAGTTGATAACTGAATTATGCCCTAGAG TGTGGTGATTCAGCATCGTTCTGTTGAATCCCCATTCATCTTCAAGCTATCACTTCAAATTTGAGAGTTAATGCGTGACT ATTTTTACTTGCATGCTATTTATACTCTTTACAGCAATAGTAAGTAGTTAAATTTCTGATCCTATTTGTTCATGCCAAAT ATAGAGGGGAGAGAACTGGTGCGGATATTACTTGCGGCAGGAGCTGATCCATCTGCTCAAGATTCACAGAATGGGAGGAC GGCTTTGCATACAGCTGCTATGACTAACGATGTAGACTTGGTTAAGGTTAGTGAATAAACTCTTGCTAAGAATGATTAAG TCTCCATAAGTATTTTGTTGGTCATTTTTGACTTCATGCTTTTATGATTTCGTTGCTTCGTGTAGGTTATTCTTGCTGCT GGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCATTTGGCCTTAGCTAGGGGTGCAAAGGCATGTGT TGGACTGCTTCTAGCTTCTGGGGCAGATTATAATTTGCAGGTTTTCTTCTGAATTCCCATTCTCACCATTTGATCACATT ACTAGTATACTTATAATTCTAATTACTTCAGAATCTTGATCTCTGGTAGCATTATTAACTATGGTTGTCTGCTCTGATTT TTTTTATTTATATTTTATATTTTCCCCTTATTTCTCATATGTATTATAAAATTGTTCTATTTACTTCATCAGGATGATGA TGGTGACAATGCTTTCCATATAGCAGCAGAGACTGCAAAAATGATACGTGAAAATCTTGACTGGCTTATTGTTATGCTAA AGAATCCCAATGCTGATATTGAGGTTAGAAACCACAGGTAAGACATAGCTTAAGGCACCGCATTTTATTAAGTTTTAAAT ATTTTATTATAAACATATCTGAATAACTATTGTCATAACTTTGATAATGTGTTTGGCTACTGATTGCTAGTCCAGTAGTC CAGATTAACATATTAAACCCATTGAACTCCAAATCAATATAACTGATAAGTTATGTTTTATGATAGTGGCAAGACACTAC GTGACATCTTAGAGGCTCTCCCCCGAGAATGGATGTCAGAAGATTTGATGGAGGCACTCATGAATAGAGGAGTTCATTTG TCTTCTACAATGTGGGTGGAAAGCATAGTTTTCTGCATTTCATATTGGTACTATATGTGACTATGTGACTAATACTTATT AAAATTTGTTTATTTATGGCTGAATAGATTTGAAGTGGGGGACTGGGTGAAGTTCAAAAGAACTGTCATAACTCCATCAT ATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGGGATAATCTCATTGTTTCATTT TGTTCGGGGGAGGTTCATGTGCTGGCAAATGAAGTTGTAAAAGTCATTCCATTGGACAGGGGACAACATGTACAATTGAA AGAAGATGTAAAAGAGCCAAGGTATGATATTGCATAA
CDS sequence (LotjaGi3g1v0108600.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTGCTTCTAAGAAAGATCATGAAAGTGAGGGGAGAGAACTGGTGCGGATATTACTTGCGGCAGGAGCTGATCC ATCTGCTCAAGATTCACAGAATGGGAGGACGGCTTTGCATACAGCTGCTATGACTAACGATGTAGACTTGGTTAAGGTTA TTCTTGCTGCTGGGGTTGATGTGAACATTCGCAATGTGCACAACAGTATACCTCTTCATTTGGCCTTAGCTAGGGGTGCA AAGGCATGTGTTGGACTGCTTCTAGCTTCTGGGGCAGATTATAATTTGCAGGATGATGATGGTGACAATGCTTTCCATAT AGCAGCAGAGACTGCAAAAATGATACGTGAAAATCTTGACTGGCTTATTGTTATGCTAAAGAATCCCAATGCTGATATTG AGGTTAGAAACCACAGTGGCAAGACACTACGTGACATCTTAGAGGCTCTCCCCCGAGAATGGATGTCAGAAGATTTGATG GAGGCACTCATGAATAGAGGAGTTCATTTGTCTTCTACAATATTTGAAGTGGGGGACTGGGTGAAGTTCAAAAGAACTGT CATAACTCCATCATATGGGTGGCAAGGTGCTAGACCAAAGAGTGTTGGTTTTGTGCAAAGTGTTCCAGACAGGGATAATC TCATTGTTTCATTTTGTTCGGGGGAGGTTCATGTGCTGGCAAATGAAGTTGTAAAAGTCATTCCATTGGACAGGGGACAA CATGTACAATTGAAAGAAGATGTAAAAGAGCCAAGGTATGATATTGCATAA
Protein sequence (LotjaGi3g1v0108600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAASKKDHESEGRELVRILLAAGADPSAQDSQNGRTALHTAAMTNDVDLVKVILAAGVDVNIRNVHNSIPLHLALARGA KACVGLLLASGADYNLQDDDGDNAFHIAAETAKMIRENLDWLIVMLKNPNADIEVRNHSGKTLRDILEALPREWMSEDLM EALMNRGVHLSSTIFEVGDWVKFKRTVITPSYGWQGARPKSVGFVQSVPDRDNLIVSFCSGEVHVLANEVVKVIPLDRGQ HVQLKEDVKEPRYDIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 1.0E-132 | – | |
| ProSiteProfiles | 1 | 142 | 142 | 35.782 | ||
| Gene3D | 1 | 72 | 72 | 1.3E-18 | ||
| PANTHER | 1 | 255 | 255 | 1.0E-132 | – | |
| Pfam | 13 | 98 | 86 | 2.7E-14 | ||
| SUPERFAMILY | 14 | 159 | 146 | 1.38E-29 | ||
| SMART | 34 | 63 | 30 | 2.8E-6 | ||
| ProSiteProfiles | 34 | 66 | 33 | 14.239 | ||
| PRINTS | 35 | 50 | 16 | 9.4E-6 | ||
| SMART | 67 | 96 | 30 | 0.45 | ||
| ProSiteProfiles | 67 | 99 | 33 | 11.461 | ||
| Gene3D | 73 | 168 | 96 | 3.3E-13 | ||
| PRINTS | 83 | 97 | 15 | 9.4E-6 | ||
| SMART | 100 | 135 | 36 | 480.0 | ||
| Pfam | 175 | 220 | 46 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0108600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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