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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • G3DSA:1.20.5.510
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.018s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v1788140.1
n.a. Ultraviolet-B-repressible protein [Medicago truncatula] gi|357465827|ref|XP_003603198.1| chr1 21375335 21377223 +
1 domain prediction
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Lj1g3v3289980.3
n.a. PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform 2 [Fragaria vesca subsp]. vesca] gi|470108279|ref|XP_004290449.1| chr1 36921031 36927206 +
1 domain prediction
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Lj1g3v3289980.4
n.a. Ser/Thr protein kinase [Medicago truncatula] gi|357508171|ref|XP_003624374.1| chr1 36923075 36925909 +
1 domain prediction
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Ljchlorog3v0010790.1
n.a. cytochrome b6/f complex subunit IV (chloroplast) [Tectona grandis] gi|442742993|ref|YP_007353945.1| chloro 74875 75281 +
1 domain prediction
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Ljchlorog3v0010800.1
n.a. cytochrome b6/f complex subunit IV [Lotus japonicus] gi|13518469|ref|NP_084828.1| chloro 74969 75543 +
1 domain prediction
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LotjaGi1g1v0370700.1
n.a. Photosystem II reaction center X protein; TAIR: AT2G06520.1 photosystem II subunit X; Swiss-Prot: sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein; TrEMBL-Plants: tr|I3T9R5|I3T9R5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0370700 LjG1.1_chr1 84916035 84918823 +
1 domain prediction
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LotjaGi4g1v0327200.1
n.a. Photosystem II reaction center X protein; TAIR: AT2G06520.1 photosystem II subunit X; Swiss-Prot: sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein; TrEMBL-Plants: tr|A0A0L9UYC3|A0A0L9UYC3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0327200 LjG1.1_chr4 70538602 70538973 -
1 domain prediction
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LotjaGi5g1v0223700.1
n.a. Cytochrome b6-f complex subunit 4; TAIR: ATCG00730.1 photosynthetic electron transfer D (ChrC); Swiss-Prot: sp|Q9BBQ5|PETD_LOTJA Cytochrome b6-f complex subunit 4; TrEMBL-Plants: tr|A0A1D8R9R1|A0A1D8R9R1_9MAGN Cytochrome b6-f complex subunit 4; Found in the gene: LotjaGi5g1v0223700 LjG1.1_chr5 53020659 53021183 +
1 domain prediction
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LotjaGi5g1v0223700.2
n.a. Cytochrome b6-f complex subunit 4; TAIR: ATCG00730.1 photosynthetic electron transfer D (ChrC); Swiss-Prot: sp|Q9BBQ5|PETD_LOTJA Cytochrome b6-f complex subunit 4; TrEMBL-Plants: tr|A0A1B1FK37|A0A1B1FK37_POGCB Cytochrome b6-f complex subunit 4; Found in the gene: LotjaGi5g1v0223700 LjG1.1_chr5 53020659 53021286 +
1 domain prediction
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LotjaGi6g1v0226600.1
n.a. Photosystem II reaction center X protein; TAIR: AT2G06520.1 photosystem II subunit X; Swiss-Prot: sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein; TrEMBL-Plants: tr|I3S267|I3S267_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0226600 LjG1.1_chr6 53265752 53266111 -
1 domain prediction
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