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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR024134
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.129s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0070429.1
n.a. Superoxide dismutase [Medicago truncatula] gi|357497317|ref|XP_003618947.1| chr0 25670239 25674567 +
2 domain predictions
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Lj0g3v0080529.1
n.a. Cu/Zn-superoxide dismutase copper chaperone [Glycine max] gi|351722110|ref|NP_001235441.1| chr0 31227500 31233353 +
2 domain predictions
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Lj1g3v0318300.1
n.a. PREDICTED: superoxide dismutase [Cu]-Zn] gi|470102209|ref|XP_004287550.1| chr1 3725630 3726069 +
2 domain predictions
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Lj1g3v4955350.1
n.a. cytosolic CuZn-superoxide dismutase [Lotus japonicus] gi|32441511|gb|AAP81872.1| chr1 60312087 60315295 +
2 domain predictions
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LotjaGi1g1v0417000_LC.1
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034120 91037408 -
2 domain predictions
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LotjaGi1g1v0417000_LC.2
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034120 91037408 -
2 domain predictions
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LotjaGi1g1v0417000_LC.3
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G08830.1 copper/zinc superoxide dismutase 1; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|A0A0S3S5A5|A0A0S3S5A5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034120 91037408 -
2 domain predictions
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LotjaGi1g1v0417000_LC.4
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034120 91037472 -
2 domain predictions
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LotjaGi1g1v0417000_LC.5
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034130 91037444 -
2 domain predictions
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LotjaGi1g1v0417000_LC.6
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034130 91037444 -
2 domain predictions
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LotjaGi1g1v0417000_LC.7
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G63810.1 nucleolar protein; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|G7KDK7|G7KDK7_MEDTR Nucleolar RNA-associated protein, putative; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034130 91037444 -
2 domain predictions
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LotjaGi1g1v0417000_LC.8
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G08830.1 copper/zinc superoxide dismutase 1; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|A0A0S3S5A5|A0A0S3S5A5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0417000_LC LjG1.1_chr1 91034130 91037444 -
2 domain predictions
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LotjaGi1g1v0777100.1
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G08830.1 copper/zinc superoxide dismutase 1; Swiss-Prot: sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu]-Zn]; TrEMBL-Plants: tr|Q56VR6|Q56VR6_LOTJA Superoxide dismutase [Cu]-Zn]; Found in the gene: LotjaGi1g1v0777100 LjG1.1_chr1 134922155 134927387 +
2 domain predictions
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LotjaGi2g1v0106900_LC.1
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT5G18100.1 copper/zinc superoxide dismutase 3; Swiss-Prot: sp|O49044|SODC2_MESCR Superoxide dismutase [Cu]-Zn] 2; TrEMBL-Plants: tr|I3SMT5|I3SMT5_LOTJA Superoxide dismutase [Cu]-Zn]; Found in the gene: LotjaGi2g1v0106900_LC LjG1.1_chr2 36376182 36385416 -
2 domain predictions
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LotjaGi4g1v0210500.1
n.a. Superoxide dismutase [Cu]-Zn]; TAIR: AT1G12520.1 copper chaperone for SOD1; Swiss-Prot: sp|Q9LD47|CCS_ARATH Copper chaperone for superoxide dismutase, chloroplastic/cytosolic; TrEMBL-Plants: tr|I3SA50|I3SA50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0210500 LjG1.1_chr4 49081178 49087862 +
2 domain predictions
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