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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0210500 |
| Transcript ID | LotjaGi4g1v0210500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Superoxide dismutase [Cu]-Zn]; TAIR: AT1G12520.1 copper chaperone for SOD1; Swiss-Prot: sp|Q9LD47|CCS_ARATH Copper chaperone for superoxide dismutase, chloroplastic/cytosolic; TrEMBL-Plants: tr|I3SA50|I3SA50_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0210500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:49081178..49087862) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAAGGGGAAAAAGAATATAAAGGAGCTGCGGATCCATCTAGAAGCAAGTGAGATGAAATGCAAGAGAGCGAGCGCGG GGTAGGTGCATTGCATACTGAGACCGAATATAAAGAAAGATAATTTGTTGCAGTGAAATGGCATTTCTGAGGTCAGTGGC AACAACTACAAGCGCTGCAATAGCAGCTTCTTCTGCTATCCCTGCAGTCTTCGCCTTTTCTTCTCCATCATCATCTTCCC CATCTTCTTCTTCTTCCCCCAAATCCCCAAACGCATCCTTCTCTTCCAACCCCAACAGGTTCACCCTCGTCAAAGCATTC GTTGCTCCTCCCTCACCTCTCCGAATGGACACCAAGCTCTCTAACCAGGTTCGACCTTCATCAATTTCTCTCCAATTTCA TCTCTTAATCACTGATTCACGCTGTATATCTTAACTTCTGATTCTCTTCCTCTCGCAGACCGAACATGTCTTGCCGGAGT TACTGGTGAGTTTGTTCACAATGCTCTTTCTCTCTTTTCGTCGCTATTTCTATGCGATTGATAGTTTTTTTTTATAGGCA AATATTAGTGGTTAGTAATGTTAGTAAATTAGTCATCCTCGGGTCCGAACCCGGGACTCTTCATCCCACCCAACCCTTAT GTCCCTATGGGATTGGTAGTAAAATTGCAAGTTATTTTTTTTTTTTTGTTGATTTGATTTCAGACGGAGTATATGGTGGA TATGAAATGCGCCGGTTGTGTTAATTCGGTCAAAGAGAAGCTGAACACCATTAAGGGTAAGTAAGTGTTTCAGTGATTTG CTTGAACAGGATCAACTCATGCCATATATACTTTAGCAATTTATTTCTGCTTACAGCGTGATTGAAATGTTTAAAGTATG GAATTGAATGCAAATCCATTCTTAGCTGATCTGATTTGATTGGATTTCTTCATGTATCAATGGATTTTTTTTTATGTGTA ATTGATTCTCATTTACTACTTGCCTGAAAAATGTCTCCTTTGTTAAAATTAGATCAATTTCACAAGTCTTTTGTGGTTCA AACGTGCCTGAGGTTCCCATCTTTTGTGTCATTCTGGTGCTCTCACTTTTTACAGGAGTGAAGAACGTGGAAGTGGACTT GAGCAATCAGGTTGTTAGGATACTCGGTTCGACGCCGGTGAAGACCATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAG CCAGATTAATAGGACAAGGAGTCCCAGAAGGTTCGCCGGTCAACTCCTTGCTTTTCAATGTTGCTGGTTGCAGATTTTTT AACACTAGTTTTGTGTGACTATTACTCTATATAATTCTGTTCGTAATAGAAAGTATATAACGTGATTTTGTCTTCATGTT CGATAGTTTTATACCAAAATCCTGTCTAACCCTAAAAGCACATTTGAGTTGAAATGAAGTGATGTTGCTTTTACATAAAG TTAAGAGCTTTGTACTGAAGTTTACTTTGAGAAAAAATGTTATCACTTCACTTAGCCAACACTAACTACTCAAAATCAAG TTTGCAAATTCTCCTGTTATTCATCTTCACATGAGATGGTAAAAGTTGCCAAATTGAAGGTTAGTGTTGTTTCAGATAGT TTTGCTCTTAATTTTTTTTTTGTGTATAATGATTACAGTATGACAGTTATGAAGTGTCGGTGTGATACTAGTGTGGTTGT TGTGGTGACAATCTCGCTGCTTTATGCCTCAATTTAAACTTGTTTGCTCATTACTTTTAGTTCAGAAAATCAAGGATGTT CTTCAGCATCAAATGAATGTTGATACATTTATAACCAAACATCATAGTTCACATTATACCTCTTTTAATTAAGAAAACAT TGTTGGTGCTGCATTCTCATCAAATCCTAGGTTTCTCTTACATTTGCTTATACTTTTTGATTCCCATTCCATAATCTAGT AAAACAAAACATACTAACTGAAACATTTTGAGTAATTTGCTAGTAAGACTTAATTTTATACATGTTTGCTAAAGCCCCTA AAATTACAAAGATTCGATGATCTTGTTTCTATAGACATATGTGGTTGGAGATTGGAAATTAGCATACCTAGGACACTGTT CTCTTTCTGCTATTTATTTCTACGTTGCACCAGTTACGATTCTTTGTATTTTTTGTTGTTGGTACATCAGTTTCGTTTTA TTTTCCTGCTAAAGCAGTTGAAAATCTTCATTGGAATTTTATTTATTCTTATCATCGACATTACTAACGACGGAGTATAC AGCAGGAAAACCAGTTTTTTTTTTCTTCACATATTTGATTGTATTACTTTCTTGTATTCCAATATTTATTCATATGTGAA ACGTGAGCTGTGGGGTGCTTTTGTACTACACGTGTCTGTACCCAGAGGTTGATCCATTGGTCTACAGACCAGCCAAAACA GCTGGGGTGACTGCCTAATGGCAGTAATGATTAGGAAGTAATTAGGGAAGAACTACTTAATAATTATTATGATTATACAA TGACTACTAGCACTTATTTATATGAGGAGAATATGTGAAAGTATGAGGTGTAATTATGTGTGCAATGCTGTTACTTTTTA TTGTGGATAGGTATTACACTCTGTAGGATACTTCGGTCCTTTGGACAGCCAGTATTTCTGTATTATGTCTGATTTCTATG TCAGTAATATAATTATTCAATTTATCTTGGGAGTTCTATCATTTTGATACAACCTGTTAGATCCCAAGGAGAACTGGGGC CAGTGAAGTATATCATTCACCATGGCTAGGTTGTTTGTCAGAGTGAACTTGTTGGAGGAGAAATTCATGGATATGAAGAC GAGCACTGATGAGAAGATGGCCAACATGGAGGAAAAGATAGAAAATTTGAAGGGAAAGTTTTTATCTGACAGTAGAAGAT TCTGGGCAAGCACAATGAAAGGGAACTTATGTGGAAGAGCCAATTGCCTACTTTTAGTCTGCGGGACAAGGCTGATAGTT CAGGGGGGAGGTGATGGGATCCTATGGGCTGATCTATTGTCTACAAACTAGCCAAACCAAACAGCAGTAGGGGTAACTGC TTGATGTTAGTTGTGATTAGAAAATAATTGTTGGCAGAAATGGCAGTTATGATTAGAAATTAACTACTGGCAGTTAATTA TTAGAAGTTTATGTGATAATACGGTATGTAATTATGAGATGTTGTTAGTTTTTATTGTAGACAGAAAATACTCTATGTAG GAGACTTTGGTCTCTGGAACAACAAGTGTGTTCTGTGATTTGGTCTCTGCGTTGATGGTGCTATATGACAATATCCCTTT GAAGAATGAAGGAAACTGCTGAATTTTGACACGGCATGCAGCATATTGGCATCAAGATAAGGTTGTAAACAATTGTTACA TAGGGATTGAAATTGGACAAATGGCCTGTCGGGAGTCTATGGCCTATCCCATAGTGAGTCTAGGTTAGGCTAGACCTATT TGCCAATTGAACTAAGACTTTTAAAAGTCTATTTAGCTTATAAGACTAGGATTTAGGCCATTAAAGAAGTCATTTAGGGA TGACGTTGTTCTATATAAATATGATTATGTTTTTGCTAATATTATAATGTTGTAAAATCAAATATTTGGTGGTCTATTTA TATAGCTTTATCAGTTACTAATCAAGATTGGGAGCTTCATGATGTTCATGTCCCCAGAGATGCAAATTCCTCTGCTGATT AGCTATTTGGCTAGCAAAGCAAGGATCTATGTCCAGCTCTGATTTGCTTATTTTAGAGTCCCCCCTTTTGAGTTGGAGTA GTTCCTCTTGAGGGATAGTCCTTGCAGGATTTAGCTTTTCTTTTCTTTTGTTTTCTTTTTCCATTGCACCAAAAAACCAG TTACTTAAAAATTGACTTTTAACTAGCATTTTTATACAAATCAGACTTTAAAAGAAGGCTTCCTATATCCATACTGAGGT CTCATGTTTGAGAAATAGGTCATGCCATGCCTATTTAAGTTAAAACCCAGCTTGTCCTGACTTATGTTCACCAGTGCAAA TGTAGTAGTTTCTTTCCTCGAGCAAATTATTGTAGTATTCCATTTCATGGATTCACCTATATGCTTTGTCTGTTCATCTG CCATACTCTCAATAGCCAATATATTCCTTCTTATGTTGTAGCAAATTGTCTGTATACCATATTCTCTTTATTGACCCTAA CATGGCATGGACTTGGTTTTGCTTAGACTGCAGCAACTGCTTGATGTTTTTACATTTTCTAAGAGCAAATATTTGTTTAG TTGTATGATGTGATGTTTGTATTTTATAATCCTATTATAGCACTTGTTAGTTGTTATGACAGTGTATAAACAACTCAAAT TCAAGTATTATGATTGTCAGCAATGTTATTCAAATGCTCAACTTTGCATCGTTTCAGCTGTTTTATTAGTTCTTATTTAA TTGACTCTTTCCTATGCTTTACAGACTTCTTAATATCTGCTGCTGTCTCTGAATTCAAGGGTCCCAATATTTTTGGTGTT GTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGATTGAAGCCAACTTCAGTGGGCTATCACCAGGAAAGCATGGTTG GTCCATTAATGAGTTTGGTGATCTGACTAGAGGTGCCGCGAGCACTGGTAAAGTGTTCAATCCTACAAATGAGGAAAACA CTAAAGAGGTTTGCTTTTTTGATATACCTTCTGGATGACTTCTATTTTACCGTTTTTTCTCAAGGACTAATTACTGGTAT TTATGTTATTACAAAATGGTAAAGGGGACTGAATTTTGAATATTTTGACGAATCAGAAGTATAGGATATTTCTATTGATT GAGGCTTACTATATCCCTCTAAATTGTGATTTTTGAAATGTATTACTGAAACTTCGTTTAGCTAGTGATCTAGCTTAATT TGGGGATTGGGTACGGTAGAATGGCAGAAAAATACAAGCATAGAGAATATCTGAAGTTTTCTTCCTCAAGCTACAAAAAT AGCAACAATAAGAAGCATTTTTCCATATATTTGAACCCTGTGTCCTTGTTTGTTGTTCTCTTTCTGACGGTTGTTCTTAG AAATCCTAATTTGTTTTGAATCAAATAATTTTTTAATTGTTTGGATTTGCAAATAAAATTCTTTGTTGGAAAATTAATTT TTTAATTGTTTGGATTTGCAAATAAAATCCTTTGTTGGAAAATTCAGAGTAGAGGCAAATTTGATCTGATTTCTTTTTAT TCTTTTGAAGTTTTGTTCAAATGAAAACTATATCAAACTTGGATTGAATTGATTTTACTTTTGATGGTTTAACTTGACGT TTTGGAGTTTTAGTTAATTCATTAAATCTGTTCTAAGTACGTGTCATAAAACTAGTAATGCAAAACCAAATCAATATATT TTTTAGTGTTTCACTGGTAAAATTTGATTTGAAAATTAGTTCAAATTCTATTGTTTGAAATCAAATTCTTCTATTTTTAA TGATCTCAAACACAGCATGAAAGAGGTTGTTGATTTGAATTTCAGCCACTTGGTGACCTGGGAACACTAGATGTTGACGA AAAGGGTGAGGCCTTCTACACTGGGGTCAGAGAAAATCTGAGGGTGGGTGATCTCATTGGACGATCTTTAGTGGTATATG CAACTGAAGATAAATCAGAACATGGTGTAGCTGCTGCAGTAATTGCCAGAAGTGCAGGAGTGGGTGAGAACTATAAAAAA CTCTGTACTTGTGATGGCACCACCATATGGGAGGCAAGTGACAGAGATTTTGTTACTAGCAAGGTCTGATAAAGTAGTTT CATGAAAACTTAGGATTATAATTTAGTTGCCCTGTCCTCCCCCAGTACTTCATATTTTAAGGACTTTTATACCTTATGGA TACAATAATGTTTGTTTTATACAGTTTATAACTATATTTTAAAATTATTAATATTTTGTTGTTATCATTGTGTTGTTTTT GCTGTTGTTATTATTGTTGTTCAAATTTGCGGGTGATAAAATCCATGGTAATGTGTTTTTCCATGGGAAGCCGCAATTGA ATCTCATTCTTTATGCTTGGGAAAACAATACAACTCAAAACAAAACAGAAAGAGCCGATGAGCCATGTGAGGAATCTCAA TACAACGAACACTCCAAAGAGGCGAGTGAGCGCCCCAAGCGAGCAAGGCAATCTGCGGTAGCATTAAAATCCTTCTAAAT GTTGTTTAGCGTCACTGTCTTTGAGCACTGGAAAAAACCTCACTCTTCTCATCCTCTAGAGAAATCAGGAGATCGGCACA ATCCACCTCACATATGACTTGCTTATGACCCCAACTCAAGACAAGAGAGGGATTGTAGAAAATTGAGAGATCTTGATGCA GAAAATTCAGCCAAGTAAGAGCACCCATCTTCATCCAAAACTCACTCGAACAGGGATAATTGTGGAGGCTAGGGTGCGAA TCCTCAATTGTTGCAAAACACCAGGTGCAAGTTGTAGAGTTCGTCATTTTATTTTGAACTTGTTCATATTCACTTGGAGT TACCTTCGCTTCGAAAGCCCACCCTTAACCAATACTCTTAGAGAAATAACCCAAAATCTCTCTAGATGAATTTCGATAAC GCCACCCGCTCCGCAAGGCCCTGGATTACCTTTGGAAGCTCCGTCAACATTGAATTTCAAAACTCCAGAGGAAGGTGGAG ACCATGCTACCAATCTCTTAGCTGCTACTTTCCTCTTAACTTTTG
CDS sequence (LotjaGi4g1v0210500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTCTGAGGTCAGTGGCAACAACTACAAGCGCTGCAATAGCAGCTTCTTCTGCTATCCCTGCAGTCTTCGCCTT TTCTTCTCCATCATCATCTTCCCCATCTTCTTCTTCTTCCCCCAAATCCCCAAACGCATCCTTCTCTTCCAACCCCAACA GGTTCACCCTCGTCAAAGCATTCGTTGCTCCTCCCTCACCTCTCCGAATGGACACCAAGCTCTCTAACCAGACCGAACAT GTCTTGCCGGAGTTACTGACGGAGTATATGGTGGATATGAAATGCGCCGGTTGTGTTAATTCGGTCAAAGAGAAGCTGAA CACCATTAAGGGAGTGAAGAACGTGGAAGTGGACTTGAGCAATCAGGTTGTTAGGATACTCGGTTCGACGCCGGTGAAGA CCATGACTGAAGCTTTGGAGCAGACTGGTAGAAAAGCCAGATTAATAGGACAAGGAGTCCCAGAAGACTTCTTAATATCT GCTGCTGTCTCTGAATTCAAGGGTCCCAATATTTTTGGTGTTGTTCGCCTGGCTCAAGTAAATATGGAACTGGCTAGGAT TGAAGCCAACTTCAGTGGGCTATCACCAGGAAAGCATGGTTGGTCCATTAATGAGTTTGGTGATCTGACTAGAGGTGCCG CGAGCACTGGTAAAGTGTTCAATCCTACAAATGAGGAAAACACTAAAGAGCCACTTGGTGACCTGGGAACACTAGATGTT GACGAAAAGGGTGAGGCCTTCTACACTGGGGTCAGAGAAAATCTGAGGGTGGGTGATCTCATTGGACGATCTTTAGTGGT ATATGCAACTGAAGATAAATCAGAACATGGTGTAGCTGCTGCAGTAATTGCCAGAAGTGCAGGAGTGGGTGAGAACTATA AAAAACTCTGTACTTGTGATGGCACCACCATATGGGAGGCAAGTGACAGAGATTTTGTTACTAGCAAGGTCTGA
Protein sequence (LotjaGi4g1v0210500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFLRSVATTTSAAIAASSAIPAVFAFSSPSSSSPSSSSSPKSPNASFSSNPNRFTLVKAFVAPPSPLRMDTKLSNQTEH VLPELLTEYMVDMKCAGCVNSVKEKLNTIKGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLIS AAVSEFKGPNIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFNPTNEENTKEPLGDLGTLDV DEKGEAFYTGVRENLRVGDLIGRSLVVYATEDKSEHGVAAAVIARSAGVGENYKKLCTCDGTTIWEASDRDFVTSKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 317 | 291 | - | – | |
| Gene3D | 74 | 154 | 81 | 1.4E-16 | – | |
| PANTHER | 76 | 311 | 236 | 5.1E-102 | – | |
| PANTHER | 76 | 311 | 236 | 5.1E-102 | ||
| ProSiteProfiles | 85 | 148 | 64 | 13.838 | ||
| SUPERFAMILY | 86 | 149 | 64 | 5.37E-15 | ||
| CDD | 88 | 147 | 60 | 2.25569E-14 | ||
| Pfam | 89 | 145 | 57 | 6.4E-12 | ||
| SUPERFAMILY | 150 | 309 | 160 | 1.57E-44 | ||
| Gene3D | 155 | 285 | 131 | 3.9E-29 | ||
| Pfam | 169 | 276 | 108 | 9.9E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Superoxide metabolic process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0210500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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