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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0080529 |
| Transcript ID | Lj0g3v0080529.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cu/Zn-superoxide dismutase copper chaperone [Glycine max] gi|351722110|ref|NP_001235441.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 26 | 26 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 6 | 6 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 7 | 18 | 12 | – | – | |
| Phobius | 19 | 26 | 8 | – | – | |
| Phobius | 27 | 317 | 291 | – | – | |
| ProSiteProfiles | 85 | 148 | 64 | 13.838 | ||
| SUPERFAMILY | 86 | 149 | 64 | 5.37E-15 | ||
| Gene3D | 87 | 151 | 65 | 2.70E-18 | – | |
| CDD | 88 | 147 | 60 | 4.29E-14 | ||
| Pfam | 90 | 145 | 56 | 4.20E-12 | ||
| PANTHER | 92 | 312 | 221 | 3.40E-90 | ||
| PANTHER | 92 | 312 | 221 | 3.40E-90 | ||
| SUPERFAMILY | 150 | 309 | 160 | 1.57E-44 | ||
| Gene3D | 160 | 285 | 126 | 1.30E-36 | ||
| Pfam | 169 | 279 | 111 | 8.70E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Superoxide metabolic process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj0g3v0080529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0080529.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.