Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v0816700.1

Overview

Field Value
Gene ID Lj4g3v0816700
Transcript ID Lj4g3v0816700.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein SKIP2-like [Glycine max] gi|356514260|ref|XP_003525824.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
3 433 431 2.10E-229 –
PANTHER
PTHR24006:SF481
3 433 431 2.10E-229 –
SUPERFAMILY
SSF81383
27 70 44 3.79E-08
IPR001810
Gene3D
G3DSA:1.20.1280.50
35 70 36 3.10E-07 –
Pfam
PF12937
38 70 33 1.60E-06
IPR001810
SUPERFAMILY
SSF52047
87 445 359 5.10E-37 –
Gene3D
G3DSA:3.80.10.10
88 187 100 1.50E-07
IPR032675
SMART
SM00367
126 151 26 0.013
IPR006553
Gene3D
G3DSA:3.80.10.10
251 442 192 5.50E-29
IPR032675
SMART
SM00367
283 308 26 36
IPR006553
SMART
SM00367
309 336 28 16
IPR006553
SMART
SM00367
337 361 25 440
IPR006553
SMART
SM00367
362 387 26 140
IPR006553
SMART
SM00367
388 412 25 5.7
IPR006553
SMART
SM00367
413 438 26 140
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj4g3v0816700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v0816700.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.