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Lj2g3v1717610.1

Overview

Field Value
Gene ID Lj2g3v1717610
Transcript ID Lj2g3v1717610.1
Lotus japonicus genome version MG20 v3.0
Description F-box protein SKIP19 [Medicago truncatula] gi|357439753|ref|XP_003590154.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 11 11 – –
Phobius
TRANSMEMBRANE
12 34 23 – –
TMHMM
TMhelix
13 32 20 – –
Phobius
CYTOPLASMIC_DOMAIN
35 339 305 – –
SUPERFAMILY
SSF81383
44 105 62 7.98E-12
IPR001810
PANTHER
PTHR24006
45 240 196 3.30E-27 –
ProSiteProfiles
PS50181
54 101 48 11.697
IPR001810
Gene3D
G3DSA:3.80.10.10
55 274 220 2.00E-34
IPR032675
Pfam
PF12937
57 102 46 1.30E-07
IPR001810
SUPERFAMILY
SSF52047
113 270 158 1.90E-19 –
SMART
SM00367
126 149 24 240
IPR006553
SMART
SM00367
152 177 26 0.75
IPR006553
SMART
SM00367
178 202 25 380
IPR006553
SMART
SM00367
231 255 25 120
IPR006553
PANTHER
PTHR24006
256 289 34 3.30E-27 –
SMART
SM00367
256 276 21 570
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v1717610.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1717610.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.