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Lj2g3v1890920.1

Overview

Field Value
Gene ID Lj2g3v1890920
Transcript ID Lj2g3v1890920.1
Lotus japonicus genome version MG20 v3.0
Description F-box protein [Medicago truncatula] gi|357482823|ref|XP_003611698.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
3 198 196 3.30E-28
IPR032675
PANTHER
PTHR24006
4 205 202 1.00E-27 –
SUPERFAMILY
SSF81383
4 54 51 3.66E-07
IPR001810
Pfam
PF12937
4 39 36 2.70E-06
IPR001810
SUPERFAMILY
SSF52047
60 198 139 2.75E-18 –
SMART
SM00367
99 124 26 3.5
IPR006553
SMART
SM00367
125 149 25 2
IPR006553
Pfam
PF13516
126 147 22 1.3
IPR001611
SMART
SM00367
150 175 26 2.00E-04
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj2g3v1890920.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1890920.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.