Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj2g3v1079520.1

Overview

Field Value
Gene ID Lj2g3v1079520
Transcript ID Lj2g3v1079520.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: two-component response regulator ARR12-like isoform X1 [Cicer arietinum] gi|502149920|ref|XP_004507711.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.2300
22 156 135 9.10E-33 –
SUPERFAMILY
SSF52172
22 146 125 1.99E-28
IPR011006
PANTHER
PTHR26402
23 250 228 1.60E-106 –
PANTHER
PTHR26402:SF423
23 250 228 1.60E-106 –
SMART
SM00448
23 136 114 4.00E-18
IPR001789
ProSiteProfiles
PS50110
24 140 117 33.996
IPR001789
Pfam
PF00072
25 134 110 4.30E-18
IPR001789
CDD
cd00156
26 139 114 1.23E-17 –
MobiDBLite
mobidb-lite
170 198 29 – –
ProSiteProfiles
PS51294
198 255 58 11.76
IPR017930
SUPERFAMILY
SSF46689
199 251 53 4.30E-15
IPR009057
Gene3D
G3DSA:1.10.10.60
199 250 52 4.20E-24
IPR009057
TIGRFAM
TIGR01557
201 251 51 2.50E-21
IPR006447
Pfam
PF00249
204 250 47 3.40E-07
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000160
Biological process Phosphorelay signal transduction system A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v1079520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1079520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.