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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • PTHR35460
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 16 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.021s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0283449.1
n.a. RNA ligase isoform [Medicago truncatula] gi|357472387|ref|XP_003606478.1| chr0 146918161 146935061 -
1 domain prediction
 –
Lj3g3v2297640.1
n.a. RNA ligase isoform [Medicago truncatula] gi|357472399|ref|XP_003606484.1| chr3 28009091 28011886 +
1 domain prediction
 –
Lj3g3v2309750.1
n.a. RNAligase isoform 1 [Theobroma cacao] gi|508785842|gb|EOY33098.1| chr3 28056070 28079365 -
1 domain prediction
 –
Lj3g3v2309750.2
n.a. RNA ligase isoform [Medicago truncatula] gi|357472387|ref|XP_003606478.1| chr3 28056070 28073650 -
1 domain prediction
 –
LotjaGi2g1v0363400_LC.1
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86071738 86094287 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.2
n.a. 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86071738 86094287 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.3
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86071738 86095007 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.4
n.a. RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q1RMS5|NXF1_BOVIN Nuclear RNA export factor 1; TrEMBL-Plants: tr|A0A1J7I1E9|A0A1J7I1E9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86071738 86095007 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.5
n.a. 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86071738 86095007 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.6
n.a. 3-dehydroquinate synthase; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86072139 86083854 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.7
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|B9WK98|ARGJ_CANDC Arginine biosynthesis bifunctional protein ArgJ, mitochondrial; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86072139 86094877 -
2 domain predictions
2 GO terms
LotjaGi2g1v0363400_LC.8
n.a. RNA ligase isoform 1; TAIR: AT1G07910.1 RNAligase; Swiss-Prot: sp|Q3IJA2|AROB_PSEHT 3-dehydroquinate synthase; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi2g1v0363400_LC LjG1.1_chr2 86072139 86094877 -
2 domain predictions
2 GO terms
LotjaGi3g1v0364800.1
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0364800 LjG1.1_chr3 75049012 75067429 +
2 domain predictions
2 GO terms
LotjaGi3g1v0364800.2
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q9FR53|TOR_ARATH Serine/threonine-protein kinase TOR; TrEMBL-Plants: tr|A0A0R0E4L3|A0A0R0E4L3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0364800 LjG1.1_chr3 75049084 75067401 +
2 domain predictions
2 GO terms
LotjaGi3g1v0365400_LC.2
n.a. RNA ligase isoform 1; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q6D9J6|DSBD_PECAS Thiol:disulfide interchange protein DsbD; TrEMBL-Plants: tr|A0A0S3SCT5|A0A0S3SCT5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0365400_LC LjG1.1_chr3 75118260 75130868 +
2 domain predictions
2 GO terms
LotjaGi3g1v0365500_LC.1
n.a. RNA ligase, putative; TAIR: AT1G07910.2 RNAligase; Swiss-Prot: sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910; TrEMBL-Plants: tr|A0A072UKW9|A0A072UKW9_MEDTR RNA ligase, putative; Found in the gene: LotjaGi3g1v0365500_LC LjG1.1_chr3 75118358 75130868 -
2 domain predictions
2 GO terms