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IPR000277

Description

IPR000277 is a Cys/Met metabolism, pyridoxal phosphate-dependent enzyme.

<p>A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [[cite:PUB00002177], [cite:PUB00005650]] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.</p> <p>One of these enzymes is the sulfhydrylase FUB7 from fungi such as Gibberella and Fusarium. The gene is part of a cluster that mediates the biosynthesis of fusaric acid, a mycotoxin with low to moderate toxicity to animals and humans, but with high phytotoxic properties [[cite:PUB00082323]].</p> <p>Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [[cite:PUB00035505], [cite:PUB00006322], [cite:PUB00035506]]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors [[cite:PUB00035507]]. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy [[cite:PUB00035508]].</p> <p>PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the ε-amino group of an active site lysine residue on the enzyme. The α-amino group of the substrate displaces the lysine ε-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic [[cite:PUB00035504]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Transsulfuration The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes.
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.

Associated Lotus transcripts 19

Transcript Name Description Predicted domains Domain count
Cystathionine-gamma-synthase [Medicago sativa] gi|71534904|gb|AAZ32856.1| 3
PREDICTED: methionine gamma-lyase-like [Cicer arietinum] gi|502116597|ref|XP_004495508.1| 11
Uncharacterized protein isoform 1 [Theobroma cacao] gi|508720919|gb|EOY12816.1| 5
Uncharacterized protein isoform 2 [Theobroma cacao] gi|508720920|gb|EOY12817.1| 9
Uncharacterized protein isoform 2 [Theobroma cacao] gi|508720920|gb|EOY12817.1| 9
Cystathionine gamma-synthase [Lens culinaris] gi|430736216|gb|AGA60137.1| 8
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana] gi|15217498|ref|NP_174600.1| 8
Cystathionine gamma-synthase [Lens culinaris] gi|430736216|gb|AGA60137.1| 8
Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822271|pdb|1QGN|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822272|pdb|1QGN|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822273|pdb|1QGN|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822274|pdb|1QGN|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822275|pdb|1QGN|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi|5822276|pdb|1QGN|G Ch 6
PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cicer arietinum] gi|502169960|ref|XP_004514725.1| 10
PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max] gi|356571951|ref|XP_003554134.1| 10
Cystathionine gamma-synthase [Lens culinaris] gi|430736216|gb|AGA60137.1| 6
PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Cicer arietinum] gi|502101187|ref|XP_004491837.1| 20
Cystathionine-gamma-synthase [Medicago truncatula] gi|357496491|ref|XP_003618534.1| 13
Cystathionine gamma-synthase; TAIR: AT3G01120.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P55217|CGS1_ARATH Cystathionine gamma-synthase 1, chloroplastic; TrEMBL-Plants: tr|L0EKR2|L0EKR2_LENCU Cystathionine gamma-synthase; Found in the gene: LotjaGi1g1v0505500 12
Cystathionine beta-lyase/cystathionine gamma-synthase; TAIR: AT3G57050.3 cystathionine beta-lyase; Swiss-Prot: sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic; TrEMBL-Plants: tr|A0A072VLA8|A0A072VLA8_MEDTR Cystathionine beta-lyase; Found in the gene: LotjaGi2g1v0053000 11
Cystathionine beta-lyase; TAIR: AT3G57050.1 cystathionine beta-lyase; Swiss-Prot: sp|P53780|METC_ARATH Cystathionine beta-lyase, chloroplastic; TrEMBL-Plants: tr|A0A072VLA8|A0A072VLA8_MEDTR Cystathionine beta-lyase; Found in the gene: LotjaGi2g1v0053000 14
Cystathionine gamma-synthase; TAIR: AT3G01120.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P55217|CGS1_ARATH Cystathionine gamma-synthase 1, chloroplastic; TrEMBL-Plants: tr|G7KKY1|G7KKY1_MEDTR Cystathionine gamma-synthase; Found in the gene: LotjaGi2g1v0260800 13
Cystathionine gamma-lyase; TAIR: AT1G64660.1 methionine gamma-lyase; Swiss-Prot: sp|Q9SGU9|MGL_ARATH Methionine gamma-lyase; TrEMBL-Plants: tr|A0A072VNE2|A0A072VNE2_MEDTR Cystathionine beta-lyase/cystathionine gamma-synthase; Found in the gene: LotjaGi5g1v0200300 12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 5.26