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LotjaGi2g1v0260800.1

Overview

Field Value
Gene ID LotjaGi2g1v0260800
Transcript ID LotjaGi2g1v0260800.1
Lotus japonicus genome version Gifu v1.2
Description Cystathionine gamma-synthase; TAIR: AT3G01120.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P55217|CGS1_ARATH Cystathionine gamma-synthase 1, chloroplastic; TrEMBL-Plants: tr|G7KKY1|G7KKY1_MEDTR Cystathionine gamma-synthase; Found in the gene: LotjaGi2g1v0260800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:72914095..72922583) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTAGTCGACAGAAATTAATCACAAAATGAGACTATTATGTTGGTGCTGTTTTTCTATAACCCATGTTGGAGAATTCT TACGCATTGCTCCACTTTTGTCCTTTTTCAACCTTTCCATATAAAATAGAGGCACTATCAAGAACATGACGATGAAACTA ACGCAGTGAGCAAGTAGAGAAAGAGAAGTGAAGGTGGTGTAGAAAGACAGAGAGAAATGGCAGCTACTTCTATCTGTGAC AAGCTTTTCACCTCCCGTTCCGATTCTGATTTCTCCTCTCTTCCCAGATTCCAGAACCTCCGACGGCTCAAACCGTCGAG GTACCCTCCTTGTCGCCACGGTGCCACCAAGTCCCACGGGATCCGGGCGATGATTTGGCCTGCTCCCGCCGCTCCTCCGC CGACGCCTGCAGACTCCGAGACGGGTACTAATGGAGCTGTGGAGGTTAACGGTTCAGTTGATGACAGTGGCTATTCGTTT TTGAAACGCGATGGGTCCAAAACCATTCATGCTGGTACTTTCACATACACACTCACTCACTGCTACTCTGTTTTTTCATA TTATCTCTTCTCTCCTCTCCCAAATGAAACAAATATGATTTTTATAATAACTCACTCTAAATTTACAACATAACATTATC TATTAATATTTTTAGTACGTCGGAAAGATAAATTACAGGGCACAAAATTAATCATTTTAGACCTCTCATCCCAACTCAAA TGTCTAGAAGCTCTTACCATTTAAGTTATATGAAGACCATTTCCAAAAAATACTAATTAAGTTAATGTCTGTACTAAAAA TATTATTTTAAATTTCAAAACTTTTCAAAAATAGATTACGATCCTATGTGTGGTTGATAAGCTAGTTGAAATTTATAACT GAAAAATCAAGGTTATTTTTGGCATGCATGGCTGAAAAGCTAGCTGAAAGCTGATAAGCTAGCTGAAAAGCTATAATTTG TAATTTATAATATAAAATTATTTGTTTTATTCCAAAGTAGTAATTTTTGTGTGTAGGAATGGTGTGTATATGAGACAAGT GTGATAACTGATAAGTAAATAGGTTTAGTAAAAATCATATAAGGCTAAAGGTGGAATTTTAATAAAATAATAAGGATAAA AATGAGAATATATTTAATAAGCTATAAGCTTTAAGCTACGTGAGATAGCTTATAACTTAAAGCTTTAAGATACTGAAATA AACTTCTTCACCAAACACTTTTATAGAGCTTTTAAGCTAGTCAAATAAGCTATAAGTTAGCTGAAATGACATGTCAAACA CAACCTAAATTTCACAAACTTTATGATTGATATAATTACACATTTTTATTTGTTACAATTTTTTTTTGTGTAGTGCTGAA AATAAAAGACAAACAAAGAACAAAAAAATTAATTATTTTTGTAACCAAACAAATTAATTTAGGTTACAACTAATTACGAA TTTTGGATGATATTAATTTTAAAGTAATTGAATTTAATATAGTAATTTTTTAGATGAATCATTTAAAAAATTTGCTATAA AAATTTATTTTGCTAATATTTTTATTGAATTAAATGGGATAATAAGAATAATCTATATTGTAATTTAATTAAATAAAATA TACATCTACAAAATAAAATTAAAATGTTTATTTTTTAAAAAGGAATATAAAATTTTGAATAATAATCATTTTGAAATGAA AGAGTGAAATTGTGAAAAGGATAAGGATAAATATTAAAAAAAAGCTTGTTTTCTCATATGCTACCATAGACTACGAGAAA TTGTTACCAAATTGAATCAGTAACGCCGAAATATGAGATTATCGAAAAAAAATGTAGCTTAAAGTTCAAAAAACACTTTT GTACTGTTGGGAAAAGTAAAAAAAAAAAAGTTATAGTAAGTAGAATTATTTTTTTGTAAATTTTCATATAATTATGTAGA AAATATCTTTGATATCAATATATTAATATGAACATATATGATAAATGTATATTATATTAATATATTTATTGCATATATCA TAAATACATAAAAAAAATAACATATGGATAGAATGGATAAAGGAAAAAAAAACCTCTTTCCATTTTCTCACCGATTTAGA CTACGTTTGGTAAATGGTAGGGTAGAGTTGGTAAAGAAAGAAGGGGTGATGAGAGAAATGTGAGACAGAAACCACTCACA CTATGTGTCTTTGGTAAAGAGATAATTTAATTTAATTTCAAAAAAATAATAATTTAATAAAGAGGTAAATTTAGGTGGGT CTCACCCTCTATTTATTGGCTCTTACCTCTAGCGTATAAAGAATAAATTTGGGCACTCTTTTTCAGCAATTTGTCATTTA TGCCCCTATTCTCTACCACCAATCTCATTAGAACATAAAATTTTATAAATTGTTTAGTATGAGAGGAGATGAATATAAGT AAAGAGAAAAACACTTTATAAAATTTATTTATTTTCTCTTAAAGAAAAACTAATGAGCCCCACACTTTTTATTTTCTCTC TCTCGTACCAATCATATTTTTTGTATTAAGACCACATGCTTAAGAGATCCGAGCTCCTTCTACTTTGATTTACACATTGT TGGTTCCCATATCACTTTCTAAGAACAAATAGAGCTAAACAAGCTAGACTTCAGTAATAATGAAAACACAAGTTTAAATT TGGCAAAAATCATTTGTTTGGAGGGATATGAAACCGTTTCTCAAATGAGTGGTGACATTTGTCAAAAAGACTCCTCTCCC TCTCTCACAAGCATTTCTTTTTCTTTATTTTATTTCATCCAAACAATATATAAGTTCAACTTATTTTCTTTTCAATCCAT TTTTATTCTCTCATTTTCTCTACATGTCCAAATTAAGTCTGAAAAAGCATGCCAGCGGAAAAAAGGTTATATTGAATGGA TTGATGGGATGGAGAGTTTTTGGTGAAAAAGGAGGATCGATTGTTATGTGGTTTAATAAAATTACATAACTCTCAAAAGT CAAAATCTAAAAGCAAAAATATCTATTCCCTTAATCATCCACCCATCTAAGTATACTTCAAAAATATAATATTTAGATTG AAGGACTTAAATTGAATCACAATTTCCTTAAGAAAATGTTTAAAAAGCATAAAAACTGTTTTTTTTTTCCCAACTTTTTT AGTGTTTCAAACAATCCATTCAAACAAAATTAATTTTTAAATAGTTTAAATTTAATTAAATGATCACATCTATGATGGAA GCAGAGAAAAATAGTTGATTCACAACTACAAAGAGAAAATGAAATCTATCTCATACTCACTAACATAGTAACAGGAAACT AACATCATAAACTAAGTAACTAACACTCATAATTTCTTCTCTATCTTATCAATAATCCAAATGTGATTCATGAATTTTCT CTAGTGACAAATACTTGGCAATCATGTGAATTGAATCAGCTATGGCTACCAATGAAAATGAGTGTTTTGATTTTTGATTC TGGGCTATGCAGCTGAGAGATTAGGCCGGGGTATTAAAACTGATGCAATCACCACTCCTGTGGTGAACACTTCTGCTTAC TTCTTCAAGAAAACCTCTGATCTCATTGACTACAAGGTGAAAATCGCTTCCTCTTTCGGTCAAAAGATGTGAAAATATGG TTTGCAGTATAGCCATGTAGGTGTTTGTGAAATTTGCTGAATGAAGCAAACTTCATATGGTTTGTAGTAATAGCATTGTA GGTATTTGTGAATATGAACTGGTGCATAACACATGCATAGTTCTTTTAATTTTCAGGAGAAGCGCCAATTTAGTTTTGAA TATGGACGATATGGAAACCCGACGACAGTGGTTTTGGAGGAGAAGATGAGGTTTGTGTTCTCGTTTTATTAGAATTCTTA ATTAGGTGCTACTTATGTTTAATTGAGTGTGTAACAACACATCAACTGAAGTGCAGCAAATGTAATTAGGTTTCTTATTT TTTTTATGAGGCAGTGCACTGGAAGGGGCTGAATCAACTCTGTTTCTGGCATCTGGGATGTGTACTAGCACGGTGATGTT CATGGCATTGGTCCCTGCTGGTGGACATATTGTGACCACTACAGATTGCTATAGGAGGACCAGAATTTTCATTGGGAACA TGCTTCCTAAGATGGGAATCACGGTATGTCATCCAGTTATTTGGTAATATTTTTTTTGGTATAAACCATTAGGTATTTGG TCACCCTTCGGATGCTAACTATTCTGGATTCGGAATTTAGTTATAGTCAAGGCTCTTCATCCTTCTTCCCGGGTGTATTG GCGGGGATAAACCTTAGAGCTCTTCCCGCACGCTTAGTCTGCGTTGCTAACTGAGCTACCTCCCGTGGGTAATTTTGGTA ACTGAGGGCATGTTTGATAACTCTTCTAATAATTCTTCTAAAATTGATTCTAAAGTCAAAACTAATGTTGATTAGAAGTT TTTGTGATTAGAATTCAGAGATGCTAAGATTGTTTGTTTATTTTGGATAATGTTGCTTCTATAGTTCTATGTTTCTATGG TTAAAACTTAAAAATAACATGAAATAGATGTCTCTAGATAATTTTTAATCTCATTACAAATTTTTCACTTGACTGAGCAG GCCACAATAATTGATCCTTCCGATTATGATGCCTTGGAAGAAGCATTGGAAAAGAACAATGTGAGTGTTTGAAAACTGGT TTCTTTTAAGCATGTTTCCTTTTGATTTCTGTAGAATTTATAGACAGGAATGAGTTCGGATGATATTATAATCCATGCAT GTGTACAGGTCTCATTGTACTTTGCTGAGACGCCAACCAATCCATTCCAAAGATGTGTGGACATTGAGCGCGTTTCGGAA CTTTGTCACAGAAAAGGTGCATTGGTCTGCATTGATGGTACCTTTGCCACACCCATCAACATGAAGGCCCTTTCTCTTGG AGCTGATCTTGTGGTGAACTCTGCAACAAAGTACATTGCTGGACATCATGATGTAAGTCAACATGATCTTCAAAACCTTG TTTGCCAAAAATAATGAAACACTATATGAACATTTCATTCATCTATAGTTAAGCATCAATGATCTATAGTTTTTTTCTTG TTTCAGGTCATTGCTGGTTGCATTAGTGGTTCGGAGAAGTTGATTTCACAAGTTCGCAGTTTGCATTTCATTTTGGGTGG AACTCTTAGCCCGGTATTGATTCCTTGGCTGATATAATATATGTTGGCCAAGTCTTTTCCATAGAAGAATATATATGAAA AGTATTTGCACTGACACAGTGCTCAATGTTTCTCTATTAACAGAGTTCTGCATACCTAGTCCTTAGAGGCATGAAAACTC TGCATCTCCGTGTACGACAACAAAACTCAACAGCAATGAAGATGGCTGAAATTTTAGAGGCACATCCTAAGGTATAACAT TTATATATGCAATACTTGTATAATCTATTGTATCCTCTCCTACAGTCCAACTTGTTTATATTTGTTATCAGTTTTGTAGT AACTGGTTTTAAATTTATTTTCTGCATAATGTCTTCAGGGTATGTGTTATATAATTTTAGGTACCTATTTGCCATTTTAA ACGTCTGCATATTGAATAACAATACCAATGCTTTTCTATGAAGGGGTTCAAATAAATGAACATGTCAATTTAGGCATCTA ATGTGACTGTCTTTAATGGTGTGATGTTATTTGCAGGTGAAGCAAGTCTATTATCCAGGCTTGCCAAGTCATCCTGAACA TGAACTCGCCAAGAGACAGATGACTGGTTTTGGTGGTGTTGTCTGTTTTGATGTAGGGTTTGCTATTCCAATCTGATTTA TGCTGCCATTTGACTCTTCTAAAGTTAATAATTTACATTGAAGACAAAAGTGAAATCTTTAGGGCATGTTTGAAAACCCT TATTCTGAAGTCTTAATCAATTCTGAGGAAAGGTTTATGTGAGTAGCTTCTCAGTTTCAGAATTGATTATGATGAAAGAG AAGTTGATTCAAGCATGCTAAATTGCTAATAAAGATGATCAAATTATGATAAAATTCTATGTATGTACAAGTGATATCAG TAGTTGATTTCATTCTGACAATTGAAACTCTTTACTTACTTATTTGCCCAAGTTTGATAGTTATATTGCTAATCATGCAG ATTAATGGGGATTTTGAAACTACCATCAAATTTGTCGATTCGCTGAAAATTCCATACATTGCTCCATCTTTTGGTGGCTG TGAGAGTGTTGTGAATCAGCCTGCTATTATGTCTTACTGGTACATATTTTCTTGAATTCCTCTTTCAAGTGCATGATTTA CGTCAATTCATCATATTTAGTCTTCATGCATTTTTGCAACAGGGATCTTCCCCGGCCAGAAAGGGAAAAGTTTAGAATTT ATGACAATTGTGTTCGCTTCTGCTTTGGAGTCGAAGACTATGAGGATTTGAGGGATGATGTCCTACAGGCTCTGGATGCA ATATAGGCCATACCTAAGCTTGGTGAATCAATTGAATTTTGATAATTGAATGTTCTGTTGGGGTTTATGTTGGAGGTAGG AGGGTGTATAAGTTGTATGTTATGATGAATTGTTGAAACTTCCATACATTTGAGTTTCCCCTTCTCTTCTTTCAATAGTA AAAAGATAAATAAATTCCTTGGACACAGTGATAGAGCAAAGCTTTTATCAGTTTTATGTATGTGCAACAAACATAAACCA ATTAAACTATATCAAATTACATCATCAACAAATTCAACAGCAAACAAACAAGAGATGCTTTTATGAATTTAGCCACATAT ATGCATCTTCATTATCTTCTGAGTTTGGTGACCCTCTTCAAAACTCCTTTCACTTGCAAGGTCATGTTGTATATCTCATC TATTAATGATAATAAATGAGGAAGTTATTTACCCTTAGCCTTGACATATATGTATTATTACTGAACATTGAACTCTAAAA AAAAGCTTGTATAACAGCAGATTCTGAAGGTTTAATGTTTATCCAAGGGATCCTTCAATAGTGGAGCTGCATCTGGATGT AATTGCACCGAATTTCCGGGCTTGTTCCTCTTGAACGAGTTATAATCTGCTAATAATCTGAAAGCTAATCCTTTACTCAT ATCCTTCGCATAATTTCTGAGAATCTGTTAATTAGATATCAACACTAATTAGTCTGATCAGTGCAGGCTCATGCATCAAA CAGAGTAATACAGCAAAAAAAAAAGACTAGTGTAAACCAAAATAATGATTCTAACCGATTCCGAAATTCTTTGCAAGACA TGTTTAGGAACCCAGGAGAGTAAAGGAGGAACAACAAATTTTAAACTAACGTCTAACTGATACTTGATCCAGTTATGCTT TCCCTGTCTTTCCAGGAACAGAGATCCTCTGGCATCGACGCTGAAACCTTGTGGCATGTAATCAGCATGGAGATCTTGAA GCTCACATCTTGTCTATAAATAAGAGAAGTTACATCACATGTTTAGATTTGTAGGGCTTTGAGCTTGTCTAACCCCATTT GGAAGAGATTATTCAAGCTTATCTTATAGCATAAACGCTTATAGAAGTATTTGAGATTTCTTATGTAACTAGTTTATAGC CTTCCTGTAAGCTGTTTTTGGCTATTTGCATAAGCTGTTTAGATTGGTGTATAAGTAAGAGCTTATGCTTATCCATAACA TATTTTCAACTTATTTCAATAATTTCATCAAAATTAGCTTATGAAAAAAACGCGTATTGTAATAAGCATTTATTGCTACA AGTGCTTAAATAAGCTACTTACAATATGAATCTGGAGCAGTTTGGTGATATGCCCTGGGATCTCAGGTGGGTAAGCTTCA GCTTCAGATATGCATTTAGCAATGATATGTATGACTGGTTGGCATTTTAAGAACAAGACTTTCACAGGAGTCATCTTAAC TCTCCACTCTTCCTATTTACATAATTTAACATAAGCATTTTGAGATAAATTGAATGATATCTGAAAAACAGTGTTTACAT GTCTGATCAGGTTGCTCCTTATTATAGCATTATGACTAAGAAAAATCTGGTCCACAATTTGAAAAGAACAGCTAGTACCT GGTTAAGCTGCTCGGTTGTTGATTTTTTTGGAAATAAGACTCGGATTACTCTTCCCATGTCTTCCAAATAATGATCAAAG GAAGCCTTAAATGAAATACCAATCAATTAGATTAGGCACACAATTATCACAAACAATGTTCAGAAGACATGGCATTTATA TATATACATACCCAAGGATACTCATTAAGAGGAACAGCAACGGTGTTTGTGTAGCTGATGGAGGAAGTTATCATCATATT CTTGCACACTAAATCCTGTGAACCAGGTGATACTGTTTTTGTATGAAAGTGATGCAACTTATTGTGCTTCTTAGTGAGAT TCCTCGTGAGAAACTACTAATTGTGTAACATGGAAAAATAAGCTGTCATACACATAGAATTATCCCTCTCATCTAGTGGC TCGAGACATTGCTTGTAGCTGCAATTTTATAGTAATATTTTTCATTTTAAATACAATTTTCAACCATAATTTTAACAATA GCAATAAAT 

CDS sequence (LotjaGi2g1v0260800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCTACTTCTATCTGTGACAAGCTTTTCACCTCCCGTTCCGATTCTGATTTCTCCTCTCTTCCCAGATTCCAGAA CCTCCGACGGCTCAAACCGTCGAGGTACCCTCCTTGTCGCCACGGTGCCACCAAGTCCCACGGGATCCGGGCGATGATTT GGCCTGCTCCCGCCGCTCCTCCGCCGACGCCTGCAGACTCCGAGACGGGTACTAATGGAGCTGTGGAGGTTAACGGTTCA GTTGATGACAGTGGCTATTCGTTTTTGAAACGCGATGGGTCCAAAACCATTCATGCTGCTGAGAGATTAGGCCGGGGTAT TAAAACTGATGCAATCACCACTCCTGTGGTGAACACTTCTGCTTACTTCTTCAAGAAAACCTCTGATCTCATTGACTACA AGGAGAAGCGCCAATTTAGTTTTGAATATGGACGATATGGAAACCCGACGACAGTGGTTTTGGAGGAGAAGATGAGTGCA CTGGAAGGGGCTGAATCAACTCTGTTTCTGGCATCTGGGATGTGTACTAGCACGGTGATGTTCATGGCATTGGTCCCTGC TGGTGGACATATTGTGACCACTACAGATTGCTATAGGAGGACCAGAATTTTCATTGGGAACATGCTTCCTAAGATGGGAA TCACGGCCACAATAATTGATCCTTCCGATTATGATGCCTTGGAAGAAGCATTGGAAAAGAACAATGTCTCATTGTACTTT GCTGAGACGCCAACCAATCCATTCCAAAGATGTGTGGACATTGAGCGCGTTTCGGAACTTTGTCACAGAAAAGGTGCATT GGTCTGCATTGATGGTACCTTTGCCACACCCATCAACATGAAGGCCCTTTCTCTTGGAGCTGATCTTGTGGTGAACTCTG CAACAAAGTACATTGCTGGACATCATGATGTCATTGCTGGTTGCATTAGTGGTTCGGAGAAGTTGATTTCACAAGTTCGC AGTTTGCATTTCATTTTGGGTGGAACTCTTAGCCCGAGTTCTGCATACCTAGTCCTTAGAGGCATGAAAACTCTGCATCT CCGTGTACGACAACAAAACTCAACAGCAATGAAGATGGCTGAAATTTTAGAGGCACATCCTAAGGTGAAGCAAGTCTATT ATCCAGGCTTGCCAAGTCATCCTGAACATGAACTCGCCAAGAGACAGATGACTGGTTTTGGTGGTGTTGTCTGTTTTGAT ATTAATGGGGATTTTGAAACTACCATCAAATTTGTCGATTCGCTGAAAATTCCATACATTGCTCCATCTTTTGGTGGCTG TGAGAGTGTTGTGAATCAGCCTGCTATTATGTCTTACTGGGATCTTCCCCGGCCAGAAAGGGAAAAGTTTAGAATTTATG ACAATTGTGTTCGCTTCTGCTTTGGAGTCGAAGACTATGAGGATTTGAGGGATGATGTCCTACAGGCTCTGGATGCAATA TAG 

Protein sequence (LotjaGi2g1v0260800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAATSICDKLFTSRSDSDFSSLPRFQNLRRLKPSRYPPCRHGATKSHGIRAMIWPAPAAPPPTPADSETGTNGAVEVNGS VDDSGYSFLKRDGSKTIHAAERLGRGIKTDAITTPVVNTSAYFFKKTSDLIDYKEKRQFSFEYGRYGNPTTVVLEEKMSA LEGAESTLFLASGMCTSTVMFMALVPAGGHIVTTTDCYRRTRIFIGNMLPKMGITATIIDPSDYDALEEALEKNNVSLYF AETPTNPFQRCVDIERVSELCHRKGALVCIDGTFATPINMKALSLGADLVVNSATKYIAGHHDVIAGCISGSEKLISQVR SLHFILGGTLSPSSAYLVLRGMKTLHLRVRQQNSTAMKMAEILEAHPKVKQVYYPGLPSHPEHELAKRQMTGFGGVVCFD INGDFETTIKFVDSLKIPYIAPSFGGCESVVNQPAIMSYWDLPRPEREKFRIYDNCVRFCFGVEDYEDLRDDVLQALDAI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 58 78 21 -
PANTHER 70 480 411 4.5E-237
PANTHER 70 480 411 4.5E-237
Gene3D 85 342 258 9.8E-83
Pfam 96 477 382 7.6E-131
CDD 110 478 369 1.1802E-176
SUPERFAMILY 115 479 365 3.71E-104
ProSitePatterns 288 302 15 -
Gene3D 343 480 138 2.1E-51

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Biological process Transsulfuration The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes.
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0260800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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