Domain Predictions — View

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PF01053

Source: Pfam

Description

Cys/Met metabolism PLP-dependent enzyme

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0019346 View details of GO:0019346 AmiGO InterPro QuickGO	Biological process	Transsulfuration	The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes.	Subterm of GO:0006534 GO:0009092 GO:0050667
GO:0030170 View details of GO:0030170 AmiGO InterPro QuickGO	Molecular function	Pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.	Subterm of GO:0043168 GO:0050662 GO:0070279

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0108489.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: methionine gamma-lyase-like [Cicer arietinum] gi\|502116597\|ref\|XP_004495508.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PIRSF001434 PTHR11808 PTHR11808:SF55 SSF53383	11
Lj0g3v0303129.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-synthase [Lens culinaris] gi\|430736216\|gb\|AGA60137.1\|	Domains G3DSA:3.40.640.10 IPR000277 IPR015421 IPR015424 PF01053 PTHR11808 PTHR11808:SF14 SSF53383	8
Lj0g3v0303129.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [Arabidopsis thaliana] gi\|15217498\|ref\|NP_174600.1\|	Domains G3DSA:3.40.640.10 IPR000277 IPR015421 IPR015424 PF01053 PTHR11808 PTHR11808:SF14 SSF53383	8
Lj0g3v0303129.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-synthase [Lens culinaris] gi\|430736216\|gb\|AGA60137.1\|	Domains G3DSA:3.40.640.10 IPR000277 IPR015421 IPR015424 PF01053 PTHR11808 PTHR11808:SF14 SSF53383	8
Lj0g3v0303129.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822271\|pdb\|1QGN\|B Chain B, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822272\|pdb\|1QGN\|C Chain C, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822273\|pdb\|1QGN\|D Chain D, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822274\|pdb\|1QGN\|E Chain E, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822275\|pdb\|1QGN\|F Chain F, Cystathionine Gamma-Synthase From Nicotiana Tabacumgi\|5822276\|pdb\|1QGN\|G Ch	Domains IPR000277 IPR015424 PF01053 PTHR11808 PTHR11808:SF14 SSF53383	6
Lj0g3v0349269.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cystathionine beta-lyase, chloroplastic-like [Cicer arietinum] gi\|502169960\|ref\|XP_004514725.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PTHR11808 PTHR11808:SF50 SSF53383	10
Lj0g3v0349269.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cystathionine beta-lyase, chloroplastic-like [Glycine max] gi\|356571951\|ref\|XP_003554134.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PTHR11808 PTHR11808:SF50 SSF53383	10
Lj1g3v2979230.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-synthase [Lens culinaris] gi\|430736216\|gb\|AGA60137.1\|	Domains G3DSA:3.40.640.10 IPR000277 IPR015421 PF01053 PTHR11808 PTHR11808:SF14	6
Lj1g3v2979230.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: cystathionine gamma-synthase, chloroplastic-like [Cicer arietinum] gi\|502101187\|ref\|XP_004491837.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 NON_CYTOPLASMIC_DOMAIN PF01053 PS00868 PTHR11808 PTHR11808:SF14 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF53383 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE cd00614	20
Lj2g3v1068500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine-gamma-synthase [Medicago truncatula] gi\|357496491\|ref\|XP_003618534.1\|	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PS00868 PTHR11808 PTHR11808:SF14 SSF53383 cd00614 mobidb-lite	13
LotjaGi1g1v0505500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-synthase; TAIR: AT3G01120.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp\|P55217\|CGS1_ARATH Cystathionine gamma-synthase 1, chloroplastic; TrEMBL-Plants: tr\|L0EKR2\|L0EKR2_LENCU Cystathionine gamma-synthase; Found in the gene: LotjaGi1g1v0505500	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PS00868 PTHR43379 PTHR43379:SF1 SSF53383 cd00614	12
LotjaGi2g1v0053000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine beta-lyase/cystathionine gamma-synthase; TAIR: AT3G57050.3 cystathionine beta-lyase; Swiss-Prot: sp\|P53780\|METC_ARATH Cystathionine beta-lyase, chloroplastic; TrEMBL-Plants: tr\|A0A072VLA8\|A0A072VLA8_MEDTR Cystathionine beta-lyase; Found in the gene: LotjaGi2g1v0053000	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PS00868 PTHR11808 PTHR11808:SF50 SSF53383	11
LotjaGi2g1v0053000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine beta-lyase; TAIR: AT3G57050.1 cystathionine beta-lyase; Swiss-Prot: sp\|P53780\|METC_ARATH Cystathionine beta-lyase, chloroplastic; TrEMBL-Plants: tr\|A0A072VLA8\|A0A072VLA8_MEDTR Cystathionine beta-lyase; Found in the gene: LotjaGi2g1v0053000	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR006238 IPR015421 IPR015422 IPR015424 PF01053 PS00868 PTHR11808 PTHR11808:SF50 SSF53383 TIGR01329 cd00614	14
LotjaGi2g1v0260800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-synthase; TAIR: AT3G01120.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp\|P55217\|CGS1_ARATH Cystathionine gamma-synthase 1, chloroplastic; TrEMBL-Plants: tr\|G7KKY1\|G7KKY1_MEDTR Cystathionine gamma-synthase; Found in the gene: LotjaGi2g1v0260800	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PS00868 PTHR43379 PTHR43379:SF1 SSF53383 cd00614 mobidb-lite	13
LotjaGi5g1v0200300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cystathionine gamma-lyase; TAIR: AT1G64660.1 methionine gamma-lyase; Swiss-Prot: sp\|Q9SGU9\|MGL_ARATH Methionine gamma-lyase; TrEMBL-Plants: tr\|A0A072VNE2\|A0A072VNE2_MEDTR Cystathionine beta-lyase/cystathionine gamma-synthase; Found in the gene: LotjaGi5g1v0200300	Domains G3DSA:3.40.640.10 G3DSA:3.90.1150.10 IPR000277 IPR015421 IPR015422 IPR015424 PF01053 PIRSF001434 PTHR11808 PTHR11808:SF76 SSF53383 mobidb-lite	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67