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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0200300 |
| Transcript ID | LotjaGi5g1v0200300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystathionine gamma-lyase; TAIR: AT1G64660.1 methionine gamma-lyase; Swiss-Prot: sp|Q9SGU9|MGL_ARATH Methionine gamma-lyase; TrEMBL-Plants: tr|A0A072VNE2|A0A072VNE2_MEDTR Cystathionine beta-lyase/cystathionine gamma-synthase; Found in the gene: LotjaGi5g1v0200300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:49899286..49903536) extracted from Lotus japonicus Gifu genome v1.2.
TTAGATTTTCAAAAATCAATTATAGAAAATGACTTAGAAATAATTAGTCACAAAACCACTATAAATAGAGGTTTAGATCA CATATAATTTCCTACATACAAGTTTAACAAACCGAAAAGGGCTTTCAGTTTTTTCCCCTTTTCCTCTCACGAGAATTTCT CTCCCCTTCTCATCAACAACCACCACCGCCAATGGCAACCGCTCCCGCCGGTGACGCATTCGCCCTCTCCGCCGAGAAGC GCCGCCGCGCTGACGATGCAGACGGCGACGAAATTTCCGCGAAGAAGCAGATGCAGCCGTTCGCCCCGGCGGCGCACGGC GTCTTCGATCCGGCAGCCTCCCTAGCCAGCGCGCGCCACGAATTCGGCGAGCACGGCGGCGTGAACATGTCAATCGAGGC CTCCGCGACGTTCACCGTGATGGAACCCGACACGCTGCGGCGGATGTTCGCCGGAGAGCTCGGTCCCGATCGCGATTTCT TCATCTACAGCCGACATTTCAACCCTACCGTCCTCAACCTCAGCCGTCTCATGGCGGCGCTGGAGGGGACCGAGGCGGCC TACTGCACATCCAGCGGCATGTCCGCGATCTCCGCCACGCTGATGCAACTCTGCAGCCACGGCGACCACGTCGTCGCCTC GCATACTCTCTACGGTGGGACTCACGCGCTGCTGCAGCACTTCCTCCCGAGGACGTGCAACACGGTGACCAGCTTTGTGG AGATTTCTGACCTGGATGCGGTGGATGCTGCCATGGTGGAGGGGAAGACGAAGGTGCTGTACTTTGAGTCGGTTTCGAAT CCGACGCTGGAGGTGGCGAACGTGCCGGAGCTTTGCCGGTTGGCTCACCGGAAGGGAGTTACGGTGGTTGTGGACAATAC TTTTAGCCCCATGCTGCTTTCACCGGCTAGGCTCGGTGCTGACGTGGTGATTCATAGTATCTCCAAGTTCATTAGTGGTG GGGCCGATATCATTGCAGGTTTGTTTTTTTTCTTTGTTTTTATCTTTTCTATCATTCTTTACTGTTTTTGTTTGTTATTA TTGTTATTATTAATTTATTATCATGTTATGCTGATTTTTTTTTCCAAATTCTAATTGAAAATAAAAAATCTGAATAAAAA ATAAAGAAATTAATCAATATGCAATATAAAAAACACCATATAATTAAAGAGATTAATGGATATTTAAAATAATAAATATG AATAAAAAATAAAGAAATTAACCAATATGCAATATAAAAAACACCATCTAATTAAAGAGATTAATTTCGTTCAAAACAAA AAAGAGATTAATGGATATGCAAATTTTTAGTGTAAAGTAATTAAAGAAGTTTTATATGAACATCCAATCACATTACAATT ATATTTTAATTTTAATGATCTAAAGGAGTATGTCCGTTAGTGTAAAGTTTGTTTGGAACACAGACGTCTAATTGAATTCT GAAAAATATGAAAAAATATATTTAATTTTAATTTTAATTTTAATTTTAATTGTATATAACAGATTCTCTTATGTGTCCTG ATTATCAATATAAAATCATGCATATCCATTAAATTCAATTTTAATAAAGATAAAAATGAATTTTTGATGTGATGAAAATT AATTGAATGCATGTGTAAAAAGTTTTATAGTGAGGGTTAATCAATTAGCTCTTTTCAATATATTTACCATGGCTTATCTA AAAAAAATTAGTTTCTCAAAATTAAAGTTGTATAATTTTTATAAAAAAGAGAATATTAGTGGTCTTTTTATAATATTAAT GGTCAATTAAATGATAACTATATTAATCAGATTGCTTTGCGTTTTTAACATGGGAAAGTATGATTTGATTTTTGAAAGCC ATTAAAGTGGAGTCTTAAGAATATTCCAGACACATTCTGCATTTTTGTATTTTTATACACGACCTGAGTTGACTGATAAA AGATGATAATGCATGGTGGGGTAATTAGAAGACTAATTAATCTCATTCCATTTATAATAAAAGACGACATTAGTGCGTAG TTAGAAGACTCATTAAGTAATGAATCTCATTTCATTAATAATAAAAGAAGACATTATTAGCAAAAAAAAAATAAAAGAAG ATATTAGTGGGGTAATTAGAAGACTAATCCCTTTAAAACGGATGATGATCCCATGCATGACAACGCTGCTTGAGCATATC TTAACAAGATAAAAAAAAAGATAGAGATTTGAGTGACGTGGCACTGCAAAAGTTGTTTATTCATCATGGATGAATTTCTT ATCTTCTTTAAATACTGTATATTATATATTATATATTTATGAGTGCGTGTGTGTATTTTGAAATTAATTATATTATTTAA TAATTAAATTTTATTAAACAACTTTAGGACTCAGTTTGACTAATACTAGTTATCATGTTATTTTCTACAATTAATTTTGG TACTAAAATGATTTTATTTTTATGAGATGTTTGATCACAAAATGTAAATGATGAGTTTGAATATATATATATGACTTTTT CTGAAATGTTAAATATGAAACATGCAAACGTATTAAATGTGTTACCATAAATATGAATTCAAATATAAATTTTCATTTGG CTTTTTAATATAGAAAGTATATAATTTTAATATGTAAAATTAATAATTACTTTTTACATTTTAAACTTTAAAGTAAATGT TCCATTTAAAAAAAAAATTGATAAAAAGTTTTGAGTTCATGCATGTGAATTGTGATCACAAGCTTTCTCCCTAGTGATCA CCACGTGAAAAGCTGTCATCTTTTTGTTCAGCCACTACTTTTTTACCAGAACACGTGTTTAGTTAGCTATTGCCTTATCG AGTTATCGGGTCAGTATTACAAAATTTATTTGTCATCAAACTAAAATATTTTAAACTTGAAATCATCTAACCCAACTTTC AGTCTTCATTCACCTCATCAACACACTTGATTTTAACCTAGGTTCAGTCCCATCCAAATTTGTTCTTATTTGACCAATTT TTCACGGGAACTTGTTACACAAGCACACACTAAAATGATTTACAAACATAATGATATAATCCATAGGGTTAAACATCTTA TCTACCTAAGTGGTGTTTCAATCTCTTATCAAACCAATTCAATCTTGCACTCAATTAAAAAAAGAATGGGACAAGAGAAT TTCATGAATCTAATCCATACACGTGAAACTTATTATATATAAAGATAATTCCAGCAGTCTCGTCTTATCTTATATACATT TTTGAAAAGAAAACCCATGATGACAATTTCGTAGAATAATGATTCATAAAAATCCTTATTTTCACACATTTTCTTTTTAA TCTCTGCATTTTTTATCACATCATATACTGTATATATGTTAAAATTATATGTGAACAAAACATTAATGCGATTTCATATA TATTGACACAGGTGCTGTGTGCGGGCCCGCAAGCTTTGTGAATTCCATGATGAACCTCCATCAAGGAGCCATAATGCTGA TGGGACCTACCATGAACGCCAAGGTAGCATTTGAACTCTCAGAGCGTCTCCCACACTTAGGCATAAGAATGAAGGAACAC AGCCACCGCGCCTTAGAGTTCGCCACCCGCCTCAAAAACCTCGGCTACAAGGTGGTCTACCCTGGCCTGGAGGACCACCC TCGCCACGAGCTGATGAAATCCATGCACAACAAGGACTACGGCTATGGCGGCATCCTCTGCATTGACATGGAGACGGAGG AGAGGGCGAACAGGCTGATGAACCACCTGCAGAACTACGCGCAGTTCGGGCTCATGGCGGTTAGCTTGGGATACTATGAG ACACTCATGTCGTGCTCTGGAAGTAGCACCAGCAGTGAGATGAATGAAGAGGAGAAGGCATTAGCTGGGATCTCACCTGG TTTGGTGAGGATGTCGGTTGGGTATATTGGGACTTTGGAGCAGAAATGGGGTCAGCTGGAGAAGGCACTTACCAGGCTTC AGGAACATGGGTTCCCTAACAGGAAGTGATGATGATTGGTCAATTTGTGGAAATGCTAGATTGTGTTGTTGTTGTTGCTG ATGATGATGTGTAGTAGTTGTTACTGTTTGGATTATTTAATAATCTATGTTTTGGATCAGTATGTTTTAGTTTACATGTT GATCTTAATGAATATTAAGGACATTGAAAGAAAAAAAGCTCTGGATTTTTTTGTTTGTTCATTAGGGGGAATTTATGGTT GATATTACCATAAGTTGCAGTAAAAGATTTGAACAGAGGGAAATAAATGAGCCTAAATGAAATTTTAAACTCAAATTTAT CAAATTTTAAA
CDS sequence (LotjaGi5g1v0200300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCGCTCCCGCCGGTGACGCATTCGCCCTCTCCGCCGAGAAGCGCCGCCGCGCTGACGATGCAGACGGCGACGA AATTTCCGCGAAGAAGCAGATGCAGCCGTTCGCCCCGGCGGCGCACGGCGTCTTCGATCCGGCAGCCTCCCTAGCCAGCG CGCGCCACGAATTCGGCGAGCACGGCGGCGTGAACATGTCAATCGAGGCCTCCGCGACGTTCACCGTGATGGAACCCGAC ACGCTGCGGCGGATGTTCGCCGGAGAGCTCGGTCCCGATCGCGATTTCTTCATCTACAGCCGACATTTCAACCCTACCGT CCTCAACCTCAGCCGTCTCATGGCGGCGCTGGAGGGGACCGAGGCGGCCTACTGCACATCCAGCGGCATGTCCGCGATCT CCGCCACGCTGATGCAACTCTGCAGCCACGGCGACCACGTCGTCGCCTCGCATACTCTCTACGGTGGGACTCACGCGCTG CTGCAGCACTTCCTCCCGAGGACGTGCAACACGGTGACCAGCTTTGTGGAGATTTCTGACCTGGATGCGGTGGATGCTGC CATGGTGGAGGGGAAGACGAAGGTGCTGTACTTTGAGTCGGTTTCGAATCCGACGCTGGAGGTGGCGAACGTGCCGGAGC TTTGCCGGTTGGCTCACCGGAAGGGAGTTACGGTGGTTGTGGACAATACTTTTAGCCCCATGCTGCTTTCACCGGCTAGG CTCGGTGCTGACGTGGTGATTCATAGTATCTCCAAGTTCATTAGTGGTGGGGCCGATATCATTGCAGGTGCTGTGTGCGG GCCCGCAAGCTTTGTGAATTCCATGATGAACCTCCATCAAGGAGCCATAATGCTGATGGGACCTACCATGAACGCCAAGG TAGCATTTGAACTCTCAGAGCGTCTCCCACACTTAGGCATAAGAATGAAGGAACACAGCCACCGCGCCTTAGAGTTCGCC ACCCGCCTCAAAAACCTCGGCTACAAGGTGGTCTACCCTGGCCTGGAGGACCACCCTCGCCACGAGCTGATGAAATCCAT GCACAACAAGGACTACGGCTATGGCGGCATCCTCTGCATTGACATGGAGACGGAGGAGAGGGCGAACAGGCTGATGAACC ACCTGCAGAACTACGCGCAGTTCGGGCTCATGGCGGTTAGCTTGGGATACTATGAGACACTCATGTCGTGCTCTGGAAGT AGCACCAGCAGTGAGATGAATGAAGAGGAGAAGGCATTAGCTGGGATCTCACCTGGTTTGGTGAGGATGTCGGTTGGGTA TATTGGGACTTTGGAGCAGAAATGGGGTCAGCTGGAGAAGGCACTTACCAGGCTTCAGGAACATGGGTTCCCTAACAGGA AGTGA
Protein sequence (LotjaGi5g1v0200300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAPAGDAFALSAEKRRRADDADGDEISAKKQMQPFAPAAHGVFDPAASLASARHEFGEHGGVNMSIEASATFTVMEPD TLRRMFAGELGPDRDFFIYSRHFNPTVLNLSRLMAALEGTEAAYCTSSGMSAISATLMQLCSHGDHVVASHTLYGGTHAL LQHFLPRTCNTVTSFVEISDLDAVDAAMVEGKTKVLYFESVSNPTLEVANVPELCRLAHRKGVTVVVDNTFSPMLLSPAR LGADVVIHSISKFISGGADIIAGAVCGPASFVNSMMNLHQGAIMLMGPTMNAKVAFELSERLPHLGIRMKEHSHRALEFA TRLKNLGYKVVYPGLEDHPRHELMKSMHNKDYGYGGILCIDMETEERANRLMNHLQNYAQFGLMAVSLGYYETLMSCSGS STSSEMNEEEKALAGISPGLVRMSVGYIGTLEQKWGQLEKALTRLQEHGFPNRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| MobiDBLite | 12 | 29 | 18 | - | – | |
| PANTHER | 12 | 445 | 434 | 8.1E-241 | – | |
| PANTHER | 12 | 445 | 434 | 8.1E-241 | ||
| PIRSF | 34 | 446 | 413 | 4.3E-103 | ||
| Gene3D | 48 | 295 | 248 | 1.6E-66 | ||
| Pfam | 60 | 426 | 367 | 5.4E-84 | ||
| SUPERFAMILY | 74 | 442 | 369 | 5.17E-75 | ||
| Gene3D | 306 | 451 | 146 | 5.7E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Transsulfuration | The interconversion of homocysteine and cysteine via cystathionine. In contrast with enteric bacteria and mammals, Saccharomyces cerevisiae has two transsulfuration pathways employing two separate sets of enzymes. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi5g1v0200300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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