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IPR005227 is a Putative pre-16S rRNA nuclease.
<p>This entry represents a group of predicted nucleases involved in processing of the 5'-end of pre-16S rRNA. This entry typified by the Escherichia coli protein YqgF, which exhibits an RNAse H fold in crystal structure and is involved in the processing of pre-16S rRNA during ribosome maturation [[cite:PUB00076429]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Hypothetical 19.6 kDa protein [Cicer arietinum] gi|7635496|emb|CAB88667.1| | 10 | ||
| – | Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1| | 9 | ||
| – | Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1| | 10 | ||
| – | Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1| | 12 | ||
| – | Polynucleotidyl transferase [Theobroma cacao] gi|508704431|gb|EOX96327.1| | 9 | ||
| – | Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300 | 12 | ||
| – | Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi1g1v0231300 | 14 | ||
| – | Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 | 12 | ||
| – | Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 | 12 | ||
| – | Polynucleotidyl transferase isoform 2; TAIR: AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|C4Z578|YQGF_EUBE2 Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|Q9M3H7|Q9M3H7_CICAR Hypothetical 19.6 kDa protein; Found in the gene: LotjaGi2g1v0279500 | 12 | ||
| – | Holliday junction resolvase-like protein; TAIR: AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|A1SJC8|YQGF_NOCSJ Putative pre-16S rRNA nuclease; TrEMBL-Plants: tr|A0A0B2QT40|A0A0B2QT40_GLYSO Putative Holliday junction resolvase; Found in the gene: LotjaGi3g1v0205400 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd16964 | CDD | 1 | 9.09 |