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IPR005324

Source: InterPro

Description

IPR005324 is a Small ribosomal subunit protein uS5, C-terminal.

<p>This entry represents the C-terminal of the ribosomal protein uS5, which is related to the 30S ribosomal protein S5P from Sulfolobus acidocaldarius ([swissprot:O05641]). Ribosomal protein uS5 is one of the proteins from the small ribosomal subunit. In Escherichia coli, uS5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in uS5 have been shown to increase translational error frequencies.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj1g3v4694270.1
– 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1|
Domains
18
Lj2g3v0156840.1
– 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1|
Domains
20
Lj3g3v0139450.1
– 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1|
Domains
16
Lj4g3v0462600.1
– PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max] gi|356521382|ref|XP_003529335.1|
Domains
25
Lj4g3v3113160.1
– 40S ribosomal protein S2 [Medicago truncatula] gi|357521321|ref|XP_003630949.1|
Domains
20
Lj6g3v1918200.1
– 30S ribosomal protein S5 [Medicago truncatula] gi|357519961|ref|XP_003630269.1|
Domains
16
LotjaGi2g1v0072200.1
– 30S ribosomal protein S5; TAIR: AT3G57490.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0072200
Domains
19
LotjaGi3g1v0014800.1
– 30S ribosomal protein S5; TAIR: AT1G64880.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|B4RT45|RS5_ALTMD 30S ribosomal protein S5; TrEMBL-Plants: tr|G7LE23|G7LE23_MEDTR 30S ribosomal protein S5; Found in the gene: LotjaGi3g1v0014800
Domains
14
LotjaGi4g1v0057800.1
– 30S ribosomal protein S5; TAIR: AT2G33800.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic; TrEMBL-Plants: tr|I1KLL8|I1KLL8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0057800
Domains
25
LotjaGi4g1v0457300.1
– 30S ribosomal protein S5; TAIR: AT3G57490.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457300
Domains
19
LotjaGi4g1v0457300.2
– 30S ribosomal protein S5; TAIR: AT2G41840.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|P49688|RS23_ARATH 40S ribosomal protein S2-3; TrEMBL-Plants: tr|V7CT27|V7CT27_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0457300
Domains
11
LotjaGi6g1v0305300.1
– 30S ribosomal protein S5; TAIR: AT1G64880.1 Ribosomal protein S5 family protein; Swiss-Prot: sp|B4RT45|RS5_ALTMD 30S ribosomal protein S5; TrEMBL-Plants: tr|A0A1J7GE15|A0A1J7GE15_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0305300
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF54768 SUPERFAMILY 1 8.33