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IPR005746

Description

IPR005746 is a Thioredoxin.

<p>Thioredoxins [[cite:PUB00000038], [cite:PUB00002504], [cite:PUB00005258], [cite:PUB00005259]] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein [[cite:PUB00000038]].</p> <p>Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding β-strand 4, which makes contact with the active site cysteines, and is important for stability and function [[cite:PUB00005250]]. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase [[cite:PUB00005259]]. Thioredoxins have a β-α unit preceding the motif common to all these proteins.</p> <p>A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI ([ec:5.3.4.1]) [[cite:PUB00000561], [cite:PUB00001495], [cite:PUB00005423]] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding [[cite:PUB00002862]]. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent [[cite:PUB00002883]]. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity [[cite:PUB00001458]]. The various forms of PDI which are currently known are:</p> <ul><li>PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase ([ec:1.14.11.2]), as a component of oligosaccharyl transferase ([ec:2.4.1.119]), as thyroxine deiodinase ([ec:3.8.1.4]), as glutathione-insulin transhydrogenase ([ec:1.8.4.2]) and as a thyroid hormone-binding protein</li> <li>ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease.</li> <li>ERp72.</li> <li>ERp5.</li></ul> <p>Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include:</p> <ul><li>Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por).</li> <li>E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae.</li> <li>E. coli DsbD (or DipZ) and its H. influenzae orthologue.</li> <li>E. coli DsbE (or CcmG) and orthologues in H. influenzae.</li> <li>Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA).</li></ul> <p>This entry represents the thioredoxin protein family.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Glycerol ether metabolic process The chemical reactions and pathways involving glycerol ethers, any anhydride formed between two organic hydroxy compounds, one of which is glycerol.
Molecular function Protein disulfide oxidoreductase activity Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.

Associated Lotus transcripts 35

Transcript Name Description Predicted domains Domain count
Chloroplast thioredoxin M-type [Arachis hypogaea] gi|83776783|gb|ABC46707.1| 14
PREDICTED: thioredoxin-like protein CITRX, chloroplastic-like [Glycine max] gi|356508306|ref|XP_003522899.1| 10
PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Cicer arietinum] gi|502107053|ref|XP_004493141.1| 10
PREDICTED: thioredoxin-like 1-1, chloroplastic-like [Glycine max] gi|356508541|ref|XP_003523014.1| 10
Thiol:disulfide interchange protein txlA-like protein [Medicago truncatula] gi|357440993|ref|XP_003590774.1| 8
Thioredoxin-like protein [Medicago truncatula] gi|357452667|ref|XP_003596610.1| 11
PREDICTED: thioredoxin M4, chloroplastic-like isoform X1 [Cicer arietinum] gi|502167294|ref|XP_004514101.1| 14
PREDICTED: thioredoxin M4, chloroplastic-like [Glycine max] gi|356546877|ref|XP_003541848.1| 20
Thioredoxin-like protein [Medicago truncatula] gi|357443639|ref|XP_003592097.1| 15
PREDICTED: thioredoxin-like 4, chloroplastic-like isoform X1 [Cicer arietinum] gi|502132867|ref|XP_004501566.1| 10
Thioredoxin H-type 9 [Medicago truncatula] gi|357477627|ref|XP_003609099.1| 13
PREDICTED: thioredoxin H9-like isoform X1 [Cicer arietinum] gi|502155500|ref|XP_004510093.1| 14
Thioredoxin [Medicago truncatula] gi|357507807|ref|XP_003624192.1| 13
Thioredoxin [Arabidopsis thaliana] gi|21595244|gb|AAM66084.1| 19
PREDICTED: thioredoxin-like 3-1, chloroplastic-like isoform 2 [Glycine max] gi|356572122|ref|XP_003554219.1| 9
PREDICTED: thioredoxin-like 2, chloroplastic-like [Glycine max] gi|356497145|ref|XP_003517423.1| 12
PREDICTED: thioredoxin-like 2, chloroplastic-like [Glycine max] gi|356497145|ref|XP_003517423.1| 12
PREDICTED: thioredoxin H2-like [Cicer arietinum] gi|502093505|ref|XP_004489966.1| 14
PREDICTED: thioredoxin H7-like [Glycine max] gi|356498146|ref|XP_003517914.1| 13
PREDICTED: thioredoxin H2-like [Glycine max] gi|356567572|ref|XP_003551992.1| 13
PREDICTED: thioredoxin H-type-like [Cicer arietinum] gi|502161222|ref|XP_004512082.1| 13
PREDICTED: thioredoxin-like protein HCF164, chloroplastic-like [Cicer arietinum] gi|502161022|ref|XP_004511987.1| 11
10
Thioredoxin-like protein [Medicago truncatula] gi|357474835|ref|XP_003607703.1| 10
PREDICTED: thioredoxin O1, mitochondrial-like [Glycine max] gi|356512209|ref|XP_003524813.1| 11
PREDICTED: thioredoxin M3, chloroplastic-like [Cicer arietinum] gi|502143143|ref|XP_004505233.1| 20
PREDICTED: TPR repeat-containing thioredoxin TDX-like [Glycine max] gi|356524704|ref|XP_003530968.1| 17
PREDICTED: thioredoxin-like protein CDSP32, chloroplastic-like [Cicer arietinum] gi|502126453|ref|XP_004499312.1| 10
Thioredoxin-like protein [Medicago truncatula] gi|357443639|ref|XP_003592097.1| 15
PREDICTED: thioredoxin X, chloroplastic-like [Cicer arietinum] gi|502121231|ref|XP_004497231.1| 12
PREDICTED: thioredoxin-like protein CXXS1-like isoform X1 [Cicer arietinum] gi|502077471|ref|XP_004485661.1| 10
Thioredoxin; TAIR: AT4G03520.1 Thioredoxin superfamily protein; Swiss-Prot: sp|P07591|TRXM_SPIOL Thioredoxin M-type, chloroplastic; TrEMBL-Plants: tr|I3SJS4|I3SJS4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0167700 14
Thioredoxin; TAIR: AT5G39950.1 thioredoxin 2; Swiss-Prot: sp|Q38879|TRXH2_ARATH Thioredoxin H2; TrEMBL-Plants: tr|A0A151TFZ4|A0A151TFZ4_CAJCA Thioredoxin H-type 2; Found in the gene: LotjaGi2g1v0309700 14
Thioredoxin; TAIR: AT3G15360.1 thioredoxin M-type 4; Swiss-Prot: sp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic; TrEMBL-Plants: tr|A0A151S239|A0A151S239_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0048000 20
Thioredoxin; TAIR: AT3G15360.1 thioredoxin M-type 4; Swiss-Prot: sp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic; TrEMBL-Plants: tr|A0A1J7HXK2|A0A1J7HXK2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0268600 20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd02947 CDD 1 2.86