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IPR005895 is a ABC transporter, haem export, CcmA.
<p>This family contains the cytochrome c biogenesis protein encoded by ccmA, part Ccm-System I found in bacteria, archaea and plant mitochondria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as Cytochrome c maturation (Ccm)-System I are implicated in the transport and assembly of the functional cytochrome c. In some organisms this process involves up to nine (CcmABCDEFGHI) membrane proteins working together to achieve heme ligation. The post-translational pathway includes the transport of a heme b moiety, the translocation of the apocytochrome c and the covalent attachment of the heme with the apocytochrome c. CcmABCD are homologous to the ABC (ATP-binding cassette) transporters and are responsible for conveying heme b to the periplasm and loading it to the heme-chaperone CcmE [[cite:PUB00088326]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Non-intrinsic ABC protein 10 [Theobroma cacao] gi|508782333|gb|EOY29589.1| | 13 | ||
| – | Sulfate/thiosulfate import ATP-binding protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A078I7I5|A0A078I7I5_BRANA BnaA09g12540D protein; Found in the gene: LotjaGi2g1v0077200_LC | 8 | ||
| – | Sulfate/thiosulfate import ATP-binding protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A078I7I5|A0A078I7I5_BRANA BnaA09g12540D protein; Found in the gene: LotjaGi2g1v0077200_LC | 8 | ||
| – | ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A078I7I5|A0A078I7I5_BRANA BnaA09g12540D protein; Found in the gene: LotjaGi3g1v0305000_LC | 8 | ||
| – | ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A078I7I5|A0A078I7I5_BRANA BnaA09g12540D protein; Found in the gene: LotjaGi3g1v0305000_LC | 8 | ||
| – | ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A078I7I5|A0A078I7I5_BRANA BnaA09g12540D protein; Found in the gene: LotjaGi3g1v0305000_LC | 8 | ||
| – | ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A151TWV4|A0A151TWV4_CAJCA ABC transporter I family member 1; Found in the gene: LotjaGi4g1v0286000 | 13 | ||
| – | ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A151TWV4|A0A151TWV4_CAJCA ABC transporter I family member 1; Found in the gene: LotjaGi4g1v0286000 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| TIGR01189 | TIGRFAM | 1 | 12.50 |