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LotjaGi4g1v0286000.1

Overview

Field Value
Gene ID LotjaGi4g1v0286000
Transcript ID LotjaGi4g1v0286000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ATP-binding cassette protein; TAIR: AT1G63270.1 non-intrinsic ABC protein 10; Swiss-Prot: sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1; TrEMBL-Plants: tr|A0A151TWV4|A0A151TWV4_CAJCA ABC transporter I family member 1; Found in the gene: LotjaGi4g1v0286000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:65824685..65830329) extracted from Lotus japonicus Gifu genome v1.2.

CCGTGGTTGACCTCCATCACAGCATCTCCGACAAAACCAGCTAGGTCTCGAAAATAAAAGCATCAAAGAAAAAGTGAAGG ACATGCCAAAACCCAGTATGAAGAGAGAGCTATTACTAGAGAAGACCAAGAGTAAAAATGAGACAGCAAGTGAATATTGA AAATAAATAAAATAATGATCCATGGATTCAAACAATGTAGTAGACTTTCGCAAAATGAATATTTCCTTCATTCAGTAACT TGATATTTAAACCTAGCAATTTGAAAGTCAAGGAACCCAATTTTAGCTTTGTCTAACCAATTCATGTGTACTTCTGGAAC TCTGTCCATGCCATTGAATCATTGACTTCCAGAAGTTTTCCCTGTGTCTTACGTCTTATGATGTTATGGTCTATGATGGT GCAACTACCCCTTGTCATCTTGAGGCTGCAACCCAAAAGAACACCTTGGAGTCTAAGATGTTGCGAACACACAAGGTTGT CTGAACTCTGAAGTGCAAATGAGTCAAACGCAATACTAATCGGAATTCAAGCAAGTACATATAATTGTTAGCTGGTTGTC CACTCCCTCTCACTGGGACAAGCGGATTAAATGACTTCTGACCACTGTTTGGATACTGATCATGATTCATGCCGGTATCA AACCCAAAAACAGCATGACTAATGAACTCGCATGCACATGTCCATCACAGCTTGAATATTTTGGCTGCTGGCTAGATTTT GAAACATTCCTTCTTGATGGGTGGCAATCCTCTCATAGCTAATTAGCCAGCAAAAAAATATAAGATAGCAACACTGCTAC ACTTAGTGTAACACTCTGGGGAAATGGCATCCTGAAAAGGAATATACCACAGGTAAGAATATAGTTTTACCAAATGATAG AAAACAAGAATTCGGTAACAAAAATTTCAGGATTTTTTTCTATAAGAGGAAGCATTGGAATTGGTAACATGACTAACATC CAGTTATTCTTTAACACAAGCTTACTTCTATACCTAAGAAAAAGAATGATCAAATGCACTTTAGATTATGAATTTCTTAA AAAAAATGTAAAAGAGTCATCTTCCCAGAATCTCAGTCAAAGAATTGATAGAGGGTTTTCTGATTAGAGTGAACATTACA GTCTTACATTGTGCATGCGTGGATCGTCTCCCCATTATTGCTAAACGCCACCACAAACTCTAAGTTGTATCTCGTGGCTG CCTTCTTGGTCTACATGAATAAAAGAACATGAAAATACAGGGAAAAAAGAAGTAAAGAATTATAACAAAAGTTGAGACTG TCTCTATTAAAACCAATATATATTCCTAAAGAAAATGCAAGCAGGCAGAAGGCACAAATAAGTTTAAAGACAAGAGATGG TGGTCCAGATGCTCATTGTACTTATCCCAAGATAGTTGCTAAGAGCCTAAGACGCTTTTCTTAACAGTATAAACCATACA CTAACCCATACAACAAATGAAAAATCACTCTACTGATTAATTGGAAAAATTGACAGGTAAAGAATGGGAACACTAGTCAA ATAATACCTCCCAAATCATCTCCTGTAGTTTCACTTTCAGGCAATGAATCCAAATGGGGTTGGTATCCTTCATCTTTCAT CAATTTGGTTAACAACCTTAGTTCTGACCGTATTTCATCAATTTGTGGGTGCATACTGTCTCCAACAACAAATACATGAA CCAAACTCTTCAACTCAATCCAACTACAACCAGGTTCTTTAGCTACCCCTCGAGCTTTCATCATTCTCCTTACACGCTCT ACGTCTTCCCACTGACCTAAGGCTGTATATATACTTGATAACAATACATAAGCAGATGATTCTGGTGAGCCTAACTCCAT TAGTTTCTCACCAGCATAAGCACCAATATCATAATTGTGATGGTTCCTACAGCCCCCTAATAATATGCGCCACAAACATA GACCATGATCAACTTCTGCTGATTCAATGAACTCTTTAGCTTCATTGAGCTTACCGGCACGGCTCAGGATATCAACCATG CAAGCATAATGCTCTACTGTTGGAGTAATGTCAAACTCATCAGACATCATCTTGAAATAATCCCAGCCTCTGTCTACCAG TCCCATATGACTACAAGCGGAGAGAAGATTCACGAATGTGACAGTATCAGGCTTTGTTCCCTCCAACAACATCTTGTCAA ACAGTTCCAAGGCTTTGTTACCATGACCATTCTGAGAAAGACCAGATATCATTGCATTCCAGGAAATTACATCCCTGGTA GGCATCCTCCAAAAAATAAGATAACCGTCATCCAAACTTCCACATTTAGCATACATAGCAGAAAGTGCACTTCCAACGGG AACTTCTAAGTTGAAACCGTACTTAACAATCCCGGCGTGCATTTGCTTTCCCTGATCTAAAGCAGCTAGGCTGGAACAAG CTTTAAGGACACTAGCCATAGTTAGCTCATTGGGGATAATTCTCTCGATCTGCATTTTGCCGTACAGATTTAGAGCACCT TCAAAATCCCCATTCTGTACATACCCGGTTATGATAGAAGTCCACAAAACAACATCAGGTTGTTGTACATACTCAAAACC CCTCCGAGCATCCGCTAAGCTACCACATTTTGCATACATGTCCACCAATGATGATAAAACATACAATTGCAATCCAAACC CCAACTTCAAGGAATAACCATGCATCTGTCTCCCTTCCACAATAGCACAAAGGTCGCTGCAAGCATTGATCACCCCAACA AGAGTAAACTCACTAGGCAACACACCAGAGCAATGCATACTGTGAAACAGCCTCAACGCTTTCTCCGAGTCCCCACTCTG TGCATAACCAGTAACCATGGCCGACCACGTGATCGAATTCTTGTTACCCGAAAATTCGAAAGTCCTAAGCGCATCATCCA AGCTCCCACATTTCGCATACAACGTCACAAGAGCATTGGCAACAGAAACAATAGAAAGCAACCCATTTTTCATGGCAAGG GAATGAACTTGTCTACCAGTATCCAAAAACTCAGTTCTATTCAAGGCACTAAGAATACTGGTGAGCACGAACTCATTCTC ACCCTCCTCTTCTTCACAACGCATTTGTTCAAAGAGCTCGATCGCCTCCTTAGCAAGCCCCAGAGAAGCATACCCAGAAA GCATGGTAGCCCAAGAAACAGTATTCCTCTGCGGCATTCTGTCGAACAGCTTGCGAGCTTCCGAGACAAGACCCGTCTTG CAGTACATATTAAGCATGGAGCTCCCAACAAACACATCACCGGAGCAGGCGGTTTTGACTGCAACGGTATGCGCCTGACG GCCGGCAACGACATCGGAGAGACTAGAAGCGGCGGAGAACACGCCGGCGAAGGTGTGGGCATTGGGGAGGGCGTTATGGG AGCGCATCATGCGTTGAAAGAGGTGGATGGCGGAGGAAGGAGCGCGGTGTTGTGAGGCGTTGATGAGGGAGTTCCATGAG ACGACGTCGTCTATGCGGTGGCCGACGATGGTTTGGAAGAGGAGGTTGGCGTCGGAGAGGGAAGCGCACTTGGCGTAGAA GTTGAGGAGGGTGTTGGCGAGGTATGTGGAGGAGATGAATGAACCGTTTTTGAGGATGTGAGCGTGGAGTTTTCGACCTT TGCGTAGGTCTTTAAGGTTTGTGAGGTTGATGAGTTCTGTCAATATTTGTCGTGACGATGATGATGATGATGATGATGAT GATGATGCTGCCGATGATGTTGCTACGGCTATGCCTTCGTCAAAAACCTTCGCCCTTAGCATTACTCACTCACAAACTCT CCTAATCAGTATTCAGTATACTAAAATTGCTATGTGTTATTCCATTGAATTTTCACATGCCCATATATAATATTTATTTT AAATTAAATTATGGTACGTAATATATAAATGTAATTTTTTACTTTTTCATTCTATATTTTTTTCTTCTCATAGGGTTAGG GAATGAAGCTAAAAGCTCCTCTAGCTATTTCCTTCTCCCCAACACCCCAGGTTCGTTGTCTCTTCCTGCTGCTTTCACTT TCATTTGTTCAGTTTTCGTTTGTTGTTGCTGTAGCTATAGTGTGAGGTGAGACAGAAATATGGATTTGTAGGGAATAGAA TGTTACTCTTCTAGTCTTCTTTAATTCACAACATTTTGATTTTTTTTTTAAATATTTTTAACATGCTTCCTGGGTTCTAC ATTTTGGGGCTTTAAGATTTGTAATGGGTGCTGTTAGTCTCCTAGAACCACTTTAAGGATGAGTACCATTTTGTTTTGGT ATGCTTGTAGTCTTAGTGTTCGATGAAATGCTTGAACCACTTGTGATCAAGCTGAGAGACACAGACTTTCGTAAAATTTG TATTAGTGCTTGTGCTGCTTTTCTATTGTAAATTATGATCAGTGAGATAATACTGATAGTTGAATGAGTTCATACAAAGC TGTACACTTGTCTAGGTTATTGGCTTTTCTTTTTTACATCTTTGATTGGTTTCATTTCTCTAATAATTTGTTCTATTTTA TTTTACAGTAAAATTGTGCTCAAGGATGCTCTATGAGTTGCACTAATTGCATCATCAACGGGAAGTAAAGGATCAGAGAT CATTTATCTGAATTTCTGCATATTGACAGTGGGTTCCTGTTTTGAATTGTTAAACTAGATGTCTGCTAGAGCCACCCCCT TCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCGCAGCAAGTTCTGCGTCATGTGAATGTCTCTCTTCAT GATGGAGGAGCCCTCGTGCTAACCGGTGCAAATGGTTCTGGAAAGTCAACTTTCTTGCGCATGTTAGCCGGGTTCTCCCG TCCTTCTGCAGGTGAAATCCTTTGGAATGGCCATAACACTCAAGACTCTGGAATCTTCCATCAGTATAAGCTTCAGCTTA ACTGGCTCTCTCTCAAGGATGCCATCGATGGTAGGCTTACAGTTGTTGAAAATGTCCGATGGTTTGAAACTCTGGAAAAC AAGTACGGGAAGGCTTTGCCTGCACTTGAGTTGATGGGACTGGGAAGATTGGCCAACGAAAAGCCAAGGATGCTATCTAT GGGACAAAGGAAAAGGCTGCAACTTGCAAGATTGCTCGCGATTGATCGCCCCATATGGTTGCTGGATGAGCCTTCAGTTG CATTAGATGATGAAGGTGTGAGGTTACTTGAGTACATTATTGCAGAGCACAGGAAACAAGGAGGCATTGTGATTGTGGCG ACTCATTTACCTATTGAGATAGAAGATTCCATGATCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACTTTAGTGGA TATGCTTGACCGGTCAGATTATGTTGGTTAGTTCCTATTTTAATTCACATTCCCTCAAGACTAGATTAAGTTCTGGAATC AGTATCTATGCAAAATTTCATTGCTGACATTTTAGTCATGATTCATTGCTTAGTTGTCTTTATTTTGTATTTTTATTGAT CATGCTTATAGACTTGCAGTCTGATGGGTTCGTGTACATCTTCTATGAAACATTTTAAGAGCCTTGAGAACCACATTTCA AATGGGTATTCAGGCATCAGATAATACAATTGTTCTGATCTCTATCACATTCTTATTGTCAATCAATACACGGGGTGAGG GAGGAAATGAAATTAATTAAAAGAACACCAAACTTTTTCTTTTTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0286000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGCTAGAGCCACCCCCTTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCGCAGCAAGTTCTGCG TCATGTGAATGTCTCTCTTCATGATGGAGGAGCCCTCGTGCTAACCGGTGCAAATGGTTCTGGAAAGTCAACTTTCTTGC GCATGTTAGCCGGGTTCTCCCGTCCTTCTGCAGGTGAAATCCTTTGGAATGGCCATAACACTCAAGACTCTGGAATCTTC CATCAGTATAAGCTTCAGCTTAACTGGCTCTCTCTCAAGGATGCCATCGATGGTAGGCTTACAGTTGTTGAAAATGTCCG ATGGTTTGAAACTCTGGAAAACAAGTACGGGAAGGCTTTGCCTGCACTTGAGTTGATGGGACTGGGAAGATTGGCCAACG AAAAGCCAAGGATGCTATCTATGGGACAAAGGAAAAGGCTGCAACTTGCAAGATTGCTCGCGATTGATCGCCCCATATGG TTGCTGGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTGAGGTTACTTGAGTACATTATTGCAGAGCACAGGAAACA AGGAGGCATTGTGATTGTGGCGACTCATTTACCTATTGAGATAGAAGATTCCATGATCTTGAGGCTGCCACCAAGGTTTC CAAGGAGGATGACTTTAGTGGATATGCTTGACCGGTCAGATTATGTTGGTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0286000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSARATPFPRLLLNNVSCMRNAQQVLRHVNVSLHDGGALVLTGANGSGKSTFLRMLAGFSRPSAGEILWNGHNTQDSGIF HQYKLQLNWLSLKDAIDGRLTVVENVRWFETLENKYGKALPALELMGLGRLANEKPRMLSMGQRKRLQLARLLAIDRPIW LLDEPSVALDDEGVRLLEYIIAEHRKQGGIVIVATHLPIEIEDSMILRLPPRFPRRMTLVDMLDRSDYVG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43499:SF1
1 223 223 1.0E-127 –
PANTHER
PTHR43499
1 223 223 1.0E-127
IPR005895
Gene3D
G3DSA:3.40.50.300
6 208 203 1.1E-41 –
ProSiteProfiles
PS50893
11 229 219 16.087
IPR003439
ProSiteProfiles
PS51243
11 209 199 62.983
IPR005895
SUPERFAMILY
SSF52540
11 202 192 3.95E-42
IPR027417
TIGRFAM
TIGR01189
13 208 196 1.1E-54
IPR005895
Pfam
PF00005
26 166 141 1.5E-26
IPR003439
SMART
SM00382
35 223 189 3.3E-15
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0286000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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