Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0105229.1

Overview

Field Value
Gene ID Lj0g3v0105229
Transcript ID Lj0g3v0105229.1
Lotus japonicus genome version MG20 v3.0
Description Non-intrinsic ABC protein 10 [Theobroma cacao] gi|508782333|gb|EOY29589.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50893
11 229 219 15.987
IPR003439
ProSiteProfiles
PS51243
11 209 199 63.085
IPR005895
SUPERFAMILY
SSF52540
11 202 192 4.44E-42
IPR027417
PANTHER
PTHR24220:SF508
12 228 217 8.20E-111 –
PANTHER
PTHR24220
12 228 217 8.20E-111 –
TIGRFAM
TIGR01189
13 208 196 1.00E-54
IPR005895
Gene3D
G3DSA:3.40.50.300
13 203 191 6.00E-42
IPR027417
Pfam
PF00005
26 166 141 1.40E-26
IPR003439
SMART
SM00382
35 223 189 3.30E-15
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of
GO:0017004
Biological process Cytochrome complex assembly The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions.
Subterm of
GO:0022857
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0105229.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0105229.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.