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IPR007187 is a Nucleoporin, Nup133/Nup155-like, C-terminal.
<p>This is the C-terminal half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterised by the FG repeat and the other is represented by this family, which lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [[cite:PUB00019947], [cite:PUB00019951]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Nucleoporin [Lotus japonicus] gi|83423282|emb|CAI64810.1| | 10 | ||
| – | Nucleoporin [Lotus japonicus] gi|83423282|emb|CAI64810.1| | 10 | ||
| – | Nucleoporin [Lotus japonicus] gi|83423282|emb|CAI64810.1| | 10 | ||
| LjNup133 | Nucleoporin [Lotus japonicus] gi|83423282|emb|CAI64810.1| | 10 | ||
| – | PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] gi|356524549|ref|XP_003530891.1| | 8 | ||
| – | Nuclear pore complex protein Nup133 family; TAIR: AT2G05120.2 Nucleoporin, Nup133/Nup155-like protein; Swiss-Prot: sp|F4IGA5|NU133_ARATH Nuclear pore complex protein NUP133; TrEMBL-Plants: tr|Q2UY13|Q2UY13_LOTJA Nucleoporin; Found in the gene: LotjaGi1g1v0009600 | 9 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 11.11 |