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IPR042538 is a Nucleoporin, Nup155-like, C-terminal, subdomain 3.
<p>Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [[cite:PUB00019947], [cite:PUB00019951]].</p> <p>The S. Cerevisiae Nup-170, equivalent to the human Nup-155, contains two structural domains: an N-terminal β-propeller and a C-terminal α-helical domain [[cite:PUB00093066]].</p> <p>This superfamily represents the subdomain 3 of the C-terminal region found in nucleoporins Nup-155.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
| – | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 14.29 |