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IPR004870 is a Nucleoporin, Nup155-like.
<p>This is a family of nucleoporin proteins (Nups). Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two subsets of nucleoporins that contain peptide repeats have been identified: one is characterised by the FG (Phe-Gly) repeat; the other, which is included in this family, contain WD (Trp-Asp) repeats. WD repeat Nups (Nup37, Nup43, Seh1, ALADIN, RAE, and Sec13) are thought to be involved in the assembly of structural domains of the nuclear pore complex [[cite:PUB00014159]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nuclear pore | Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. | ||
Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. | ||
Molecular function | Structural constituent of nuclear pore | The action of a molecule that contributes to the structural integrity of the nuclear pore complex, a protein-lined channel in the nuclear envelope that allows the transfer of macromolecules. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] gi|356524549|ref|XP_003530891.1| | 5 | ||
– | PREDICTED: nuclear pore complex protein Nup155-like [Cicer arietinum] gi|502138295|ref|XP_004503352.1| | 5 | ||
– | PREDICTED: nuclear pore complex protein Nup155-like [Glycine max] gi|356524549|ref|XP_003530891.1| | 8 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 8 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 8 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 8 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0420500_LC | 9 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 | ||
– | Nuclear pore complex protein Nup155; TAIR: AT1G14850.1 nucleoporin 155; Swiss-Prot: sp|F4HXV6|NU155_ARATH Nuclear pore complex protein NUP155; TrEMBL-Plants: tr|I1KQB7|I1KQB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0457000 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 7.69 |