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IPR009061 is a Putative DNA-binding domain superfamily.
<p>A putative DNA-binding domain with a conserved structure is found in several different protein families. The core structure of the domain consists of a three-helical fold that is architecturally similar to that of the "winged-helix" fold, but is topologically distinct. Representatives of this domain can be found in domains B1 and B5 from the beta subunit of phenylalanine-tRNA synthetases [[cite:PUB00013204]], the C-terminal region of the DNA/RPA-binding domain of the DNA excision repair factor XPA [[cite:PUB00013205]], the N-terminal domain of the transcriptional activators BmrR and MtaN [[cite:PUB00013206]], the most conserved domain of the retinal development protein Dachshund [[cite:PUB00013207]], and the DNA-binding domain of the gpNU1 subunit from the bacteriophage lambda viral packing protein terminase [[cite:PUB00013208]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] gi|356562670|ref|XP_003549592.1| | 14 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|G7JT40|G7JT40_MEDTR Phenylalanyl-tRNA synthetase beta chain; Found in the gene: LotjaGi4g1v0259300 | 24 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|G7JT40|G7JT40_MEDTR Phenylalanyl-tRNA synthetase beta chain; Found in the gene: LotjaGi4g1v0259300 | 24 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|K7KNG2|K7KNG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0259300 | 22 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|K7KNG2|K7KNG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0259300 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00769 | CDD | 1 | 20.00 |