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LotjaGi4g1v0259300.4

Overview

Field Value
Gene ID LotjaGi4g1v0259300
Transcript ID LotjaGi4g1v0259300.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|K7KNG2|K7KNG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0259300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:61479347..61483292) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAATTGCATGCCAAGCAGTCTACATCTGACAAAAAGCAGTGTAACTTTGTTGTATCTGTACCTCCCACTAGAAGTGA TGTGCTTCACCCTTGTGATGTTATGGAGGTACTGGCAGTGATAGGTTCGATCATTGCATTATGCATATTGGATCTACTAG AGTATATTTTACTGAGATGACATCTCTTTTTTCCTTTTTCTGTTCTTTTTTATCAATAGGATGTTGCAATTGCTTATGGA TTCAATGCTATTAAGGATAAAGCAATAGTAGATAATAAAGGCTCAAAGAGACTGGCCGCTTCCTTGACACTACTTCCTCT GAATGAGATCAGTGATCTCATCAGAAAAGAGGTATAAAATTAAATAATACAGAATATGACTTCTGCGATTGAAGTATGTT AACAATAACATTTCATGCTTTTGATTTTTCTAAATCAAATTTATTTCAGCAGAATAAATTACTAAAGCACAGCTATCAAT GTATTGTTATTTGAAGTGTCTAGTTATCTGAATCTTGTTGTTCCTAACATCTTTTAGGTTACAATGATTGGATTCACGGA GGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTAAACCGGAAAGATGATAAATCTAAAGCAGTTA TCATTGGAAATCCTAGGTCTTCAGACTTTGAGGTTCACTCTCTTTATCCAACTTTTTCAACTACAAGGTTTATATGAAAA AAAATTATCTAGCTGTAATGTAAATGAAATGTCATAAAATGGTCCGTATTAGTATTGGTCATTTTGTTAGTTTTCCTGTC TTCTTAAGTTGTTCCACAAATTACTAGTAGTTTTCACTGTCTGCACATAGCTCTTCTGATTGTTTTTATTAATATGTCAT TTCTTCCTTTATATTTGATTAGTGAAGTGGCTCATTCTTCATTTTCATGACCTTTTTTGTATATGTAATTATGTATGCTT ATATATGCTGTCTTGGAATGCATCGCGTGATGTCAGCTTTGCTACATCCCAGCTACTGTCTACAAATCAATTTGCCGAAG CATACTGATAAATTTTTCTCATTACGACAAACTTTTTTCTTTCCCTTTTCTGTTTATTTTTTATTTTGCTGCGTGGATTA TATTTCCAGTATTGATATACAACCTGAAGTTGCACATACATATTACGTACTGAATCAATAGCCTGCATTTTATCTGCATT CTGCTCATTAGTAGTAGATTTACTTGGTGATAAACTTGGAAGTTAAACCAGTTGCACATTTGACTTGATAGGATTGTATA ATTCTAATATTGAACTAGTTAGGCTACGTTATACTTTGATATGATGATCTGCCATTTTGCTGGGTTCATTACTTCGATGT TTCTAACCTTTTCCCTCACTTCTTCTCGAGCACTTAATACACTCGATTCTATCTATGACAATTTGTGTTCCTTTGCATTT GGACTTACATTTATTTAAAATAAGGGTAAAACTTAAGTACAGTACCATTGGTGCAGTTGGTGCTGTTCTTCAATGAAAAA ATGACACCTGGAATTGCACTTAATTTCTTTTTGGAACCAATCCAGGAAACTTCAACACGTCTTCCTTCCCTCTTCCTCCA ACCTCTCCAACCTTCTATCTCCCTACCACCTCGCACAACATGAGTCTCTCCTTGTGCTCGCGGATGTCAATTGAAGTTGC TGGCCCAGATTATGACATGGACGACCATGAAAAGAGCTGGAGATCTTAAATTGTAGCAGCCTCGACAACAGCCATGGTAG ATTGCAGAACCAATTATACAAAATCACCCTACTTCATTGCAATTTCTTCAAATGAAAGCCCTTTGTTTTTATCATTGTTC TTGAGATTCCAGATATTTACTTCTTCACACGAATGTTTATTCAATCCCTAATATTGTCACTCCAGAATCTGAGAAGATAA GTTTCAAACCCTCTTTCATAGATTTATGGCACTGGATTCCCAATGTTCAAAGAGAGGAGATATACTCCAATTTTCGGTGG AAACATGGTTACAGAGGAAAGGCGGAAGTAGAGTATGTGTGGGAGAAAAGAATTGATTTGAAAAGTTAATGGTGTGGGGC TTGATGAGGCCAGGTGTCATTTTATGATTGAAGAACAGCACCAACAGCACAAATGGAACTGCACTTAAGTTTTTCCCTTA AAATAATTCAGCATATTGTTGGATTTGTGTATTCATTAAAGTGATATATTCGCTTTTCAATAAAATGATATATGTATCTT ATTTTTTTGGGTTTTTTGCTTTAATTTAATTTTGATATCTAACATGTATTCAGGCTGTTCGGACTAGTCTTATGCCTGGC ATTTTAAAAACTGTTGCTCACAACAAGGACCATCCTAAGCCCATAAAGGTATTTACTTAAGGTCAACCCTCTGGTGATTT ATCTTTTTAGTATGAGGCATATTTTCTATTATGAAAGCATGATCTTCGCATTAAAAATCCACTGTTAGTGATAAAAAATT ATTTGGGATGTTTTATATTAGTTATATCCTTTCAGTGTAATATTTATGAATCTGACTTGAAAGTTTTTCTGCAAATCATT GTCATTTCACATTTCCACTATTCCTTAATTAGAGATAACATCTAGCATGCAACACTCGTATGAATACAGATGTATTAGAG AAGTTGATCTTATTATATTTCTGAACTTAGTTACAACTTACAAATCAAAGAAAGATTCAGACTTCAGTTAGAGAAATTTG GCTCTACCTCAGCACTTTACAATGCTATGTCACTTTTTTTTTTCCTGTTTTCTCTATAGTAAGCTGATAAGAATACATTT CGATCTTAATTTTGATTCAGATTTTTGAAGTAGGTGATATAGCAATTTTGGATGACAAAAAAGATGTTGGTGCAAAAAAT CTACGACAACTTGCTGCACTTTACTGTGGGGCTAATGCAGGATTTGAGGTATACTTAGTAATGATTTCATGCCACTTTAG TTGGTTCTTTACTCTTTGAATACAAGTTATTGAATATTTGATGTATCACTATCTCTACTTGATTGATCAGATATGATCAA TTCCTTGATTGTTCTTTTTCAGAAGACTAAGAATCTACACTAGCCATATTTATAACAAAAGTTTGATATTTAAAATAAAT ATATACTCGCAGTTAGCATATCATAAATTAGCATTTTTCTTTCTAGACAAAGAATAAAACCTGAATTATTGTACTTAAAT TTACCTATTGATGTGCAGATAATTCATGGCTTGGTGGACAGAGTAATGGAAATGAATGGGATTCCCTTTGTTTCATCTGG TGATATATCGGGGTATTATATTGAGCGGTCAGATGTAAGTATGTTAAGTGTTAAATTCTACATAAGAGTTCTGTTTTTTT TTTTTGCCTTGTTGCTTATAAGGAACCTTTTAGTCTGCTTCTGGTGACTCGTTTTTTAACTCAACTGCTTTTTGAAGGAA CCTGAGTTTCTTGCTGGAAGACAAGCTAGAATCGTTTACAAGGGAAAGCAAATTGGGATTTTTGGCATTGTTCATCCCGA GGTACTTAAGAACACTAACATTATGTCATCTTGGTTTGACATGGCCAAATTTTTGTACATTGGTTTCCCATATATTTTTT GTGTGATTAAACCATATCTAACAAAGGTGCTTTTGGATGGGTTAAAATGATTAGAAAAGGGGGATTTGCAGAATGGTGGT GCAAGAGTTCCATATTTTTTTGTTGAGCAGATTGTTTCTCCCTGGCAATAAATCTCTATGTTCTATTCAAACTTAGCACT GTTTTATCTCTATTTCCTCATAATATAATTTGCATTTGTCCTTTCAAAACGAAGTACTAAAGTGCATGTACTTTGGAGTC ATATACATCTAAAACAAATTGTTATATTTGTTTTCAGGTATTAAACAACTTCGACATTCCAGATCCTTGCTCCTTTGTAG AGCTTAACATTGAAAGTTTGTTATAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0259300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAATTGCATGCCAAGCAGTCTACATCTGACAAAAAGCAGTGTAACTTTGTTGTATCTGTACCTCCCACTAGAAGTGA TGTGCTTCACCCTTGTGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAATGCTATTAAGGATAAAGCAATAGTAG ATAATAAAGGCTCAAAGAGACTGGCCGCTTCCTTGACACTACTTCCTCTGAATGAGATCAGTGATCTCATCAGAAAAGAG GTTACAATGATTGGATTCACGGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTAAACCGGAA AGATGATAAATCTAAAGCAGTTATCATTGGAAATCCTAGGTCTTCAGACTTTGAGGCTGTTCGGACTAGTCTTATGCCTG GCATTTTAAAAACTGTTGCTCACAACAAGGACCATCCTAAGCCCATAAAGATTTTTGAAGTAGGTGATATAGCAATTTTG GATGACAAAAAAGATGTTGGTGCAAAAAATCTACGACAACTTGCTGCACTTTACTGTGGGGCTAATGCAGGATTTGAGAT AATTCATGGCTTGGTGGACAGAGTAATGGAAATGAATGGGATTCCCTTTGTTTCATCTGGTGATATATCGGGGTATTATA TTGAGCGGTCAGATGAACCTGAGTTTCTTGCTGGAAGACAAGCTAGAATCGTTTACAAGGGAAAGCAAATTGGGATTTTT GGCATTGTTCATCCCGAGGTATTAAACAACTTCGACATTCCAGATCCTTGCTCCTTTGTAGAGCTTAACATTGAAAGTTT GTTATAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0259300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQLHAKQSTSDKKQCNFVVSVPPTRSDVLHPCDVMEDVAIAYGFNAIKDKAIVDNKGSKRLAASLTLLPLNEISDLIRKE VTMIGFTEVLTFILCSKKENFAMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAIL DDKKDVGAKNLRQLAALYCGANAGFEIIHGLVDRVMEMNGIPFVSSGDISGYYIERSDEPEFLAGRQARIVYKGKQIGIF GIVHPEVLNNFDIPDPCSFVELNIESLL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51483
1 49 49 15.983
IPR005147
Gene3D
G3DSA:3.30.56.10
1 47 47 6.1E-14 –
PANTHER
PTHR10947
1 267 267 9.6E-126 –
PANTHER
PTHR10947:SF0
1 267 267 9.6E-126 –
Pfam
PF03484
11 44 34 4.7E-9
IPR005147
SUPERFAMILY
SSF46955
13 48 36 3.85E-9
IPR009061
SUPERFAMILY
SSF55681
41 267 227 2.98E-46 –
Gene3D
G3DSA:3.30.930.10
68 268 201 3.8E-64 –
CDD
cd00769
69 267 199 2.35793E-58
IPR041616
Pfam
PF17759
69 264 196 2.4E-50
IPR041616

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006432
Biological process Phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0259300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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