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tRNA synthetase B5 domain
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: probable phenylalanyl-tRNA synthetase beta chain-like [Glycine max] gi|356562670|ref|XP_003549592.1| | 14 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|G7JT40|G7JT40_MEDTR Phenylalanyl-tRNA synthetase beta chain; Found in the gene: LotjaGi4g1v0259300 | 24 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|G7JT40|G7JT40_MEDTR Phenylalanyl-tRNA synthetase beta chain; Found in the gene: LotjaGi4g1v0259300 | 24 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|K7KNG2|K7KNG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0259300 | 22 | ||
| – | Phenylalanine--tRNA ligase beta subunit; TAIR: AT1G72550.1 tRNA synthetase beta subunit family protein; Swiss-Prot: sp|Q9SGE9|SYFB_ARATH Phenylalanine--tRNA ligase beta subunit, cytoplasmic; TrEMBL-Plants: tr|K7KNG2|K7KNG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0259300 | 13 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd00769 | CDD | 1 | 20.00 |