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IPR018274

Description

IPR018274 is a PEP-utilising enzyme, active site.

<p>A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [[cite:PUB00005010], [cite:PUB00001868], [cite:PUB00000317], [cite:PUB00017924]]. These enzymes are:</p> <ul> <li>Pyruvate,orthophosphate dikinase ([ec:2.7.9.1]) (PPDK). PPDK catalyzes the reversible phosphorylation of pyruvate and phosphate by ATP to PEP and diphosphate. In plants PPDK function in the direction of the formation of PEP, which is the primary acceptor of carbon dioxide in C4 and crassulacean acid metabolism plants. In some bacteria, such as Bacteroides symbiosus, PPDK functions in the direction of ATP synthesis.</li> <li>Phosphoenolpyruvate synthase ([ec:2.7.9.2]) (pyruvate,water dikinase). This enzyme catalyzes the reversible phosphorylation of pyruvate by ATP to form PEP, AMP and phosphate, an essential step in gluconeogenesis when pyruvate and lactate are used as a carbon source.</li> <li>Phosphoenolpyruvate-protein phosphatase ([ec:2.7.3.9]). This is the first enzyme of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from PEP is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease.</li> </ul> <p>All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved and can be used as a signature pattern for these enzymes. The signature pattern for this entry contains the phosphorylated histidine residue.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Phosphorylation The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
Molecular function Transferase activity, transferring phosphorus-containing groups Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).

Associated Lotus transcripts 9

Transcript Name Description Predicted domains Domain count
PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like [Glycine max] gi|356564561|ref|XP_003550521.1| 28
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 27
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28
Pyruvate, phosphate dikinase; TAIR: AT4G15530.5 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 25
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR01828 TIGRFAM 1 11.11