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IPR010121

Description

IPR010121 is a Pyruvate, phosphate dikinase.

<p>Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum (Bacteroides symbiosus), PPDK uses Mg2+ and NH4+ ions as cofactors [[cite:PUB00014902]]. The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres.</p> <p>In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis [[cite:PUB00014903]]. PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role [[cite:PUB00014904]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Pyruvate metabolic process The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.
Molecular function Pyruvate, phosphate dikinase activity Catalysis of the reaction: ATP + phosphate + pyruvate = AMP + diphosphate + 2 H(+) + phosphoenolpyruvate.

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like [Glycine max] gi|356564561|ref|XP_003550521.1| 28
PREDICTED: pyruvate, phosphate dikinase, chloroplastic-like isoform X6 [Cicer arietinum] gi|502151226|ref|XP_004508337.1| 10
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 29
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 11
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42910|PPDK_MESCR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 27
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A151STM8|A0A151STM8_CAJCA Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28
Pyruvate, phosphate dikinase; TAIR: AT4G15530.5 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q42736|PPDK_FLAPR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 25
Pyruvate, phosphate dikinase; TAIR: AT4G15530.1 pyruvate orthophosphate dikinase; Swiss-Prot: sp|Q39734|PPDK_FLABR Pyruvate, phosphate dikinase, chloroplastic; TrEMBL-Plants: tr|A0A0B2P153|A0A0B2P153_GLYSO Pyruvate, phosphate dikinase; Found in the gene: LotjaGi4g1v0348600 28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
TIGR01828 TIGRFAM 1 9.09