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IPR019515 is a Vacuolar protein sorting-associated protein 54, N-terminal.
<p>This entry represents a domain found in vacuolar protein sorting-associated protein 54 (VPS54), which acts as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). VPS54 is required to tether the complex to the TGN. However, it is not involved in endocytic recycling [[cite:PUB00077150]].</p> <p>Proteins containing this domain also includes VPS50 (also known as Syndetin), which is a component of the EARP complex that is involved in endocytic recycling. It is required to tether the EARP complex to recycling endosomes. Nevertheless, it is involved in retrograde transport from early and late endosomes to the TGN [[cite:PUB00077150]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max] gi|356542692|ref|XP_003539800.1| | 9 | ||
| – | PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max] gi|356542692|ref|XP_003539800.1| | 9 | ||
| – | PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max] gi|356542692|ref|XP_003539800.1| | 9 | ||
| – | Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400 | 10 | ||
| – | Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400 | 15 | ||
| – | Coiled-coil domain-containing protein 132; TAIR: AT2G27900.1 coiled-coil protein; Swiss-Prot: sp|Q5ZKV9|VPS50_CHICK Syndetin; TrEMBL-Plants: tr|I1LRA9|I1LRA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0482400 | 10 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 16.67 |