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IPR028924

Source: InterPro

Description

IPR028924 is a Permuted single zf-CXXC unit.

<p>This is a permuted version of a single unit of the zf-CXXC domain that is detected in the Demeter-like proteins and ROS1 (REPRESSOR OF SILENCING 1) from plants [[cite:PUB00069717]]. Demeter and ROS1 proteins catalyse the release of 5-methylcytosine (5-meC) from DNA by a glycosylase/lyase mechanism [[cite:PUB00069717]]. Structural comparisons show that the mono-CXXC is homologous to the structural-zinc binding domain of medium chain dehydrogenases [[cite:PUB00069716]]. The classical zf-CXXC domain binds nonmethyl-CpG dinucleotides.</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
LotjaGi1g1v0679900.1
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
Domains
18
LotjaGi1g1v0679900.2
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
Domains
18
LotjaGi1g1v0679900.3
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|A0A0B2QF73|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900
Domains
18
LotjaGi2g1v0156400_LC.10
– DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC
Domains
12
LotjaGi2g1v0156400_LC.18
– Transcriptional activator DEMETER; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A151RHD0|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
Domains
6
LotjaGi2g1v0156400_LC.22
– Transcriptional activator DEMETER; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A151RHD0|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
Domains
6
LotjaGi2g1v0156400_LC.26
– DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC
Domains
12
LotjaGi2g1v0156400_LC.27
– DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC
Domains
12
LotjaGi2g1v0156400_LC.31
– DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A0R0EEG0|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC
Domains
12
LotjaGi2g1v0156400_LC.9
– DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr|A0A151RHD0|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC
Domains
12
LotjaGi5g1v0090900_LC.1
– DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp|Q9SJQ6|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr|K7LHS4|K7LHS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0090900_LC
Domains
18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 9.09