Domain Predictions — View

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PF15628

Source: Pfam

Description

RRM in Demeter

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0679900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp\|Q9SJQ6\|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr\|A0A0B2QF73\|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900	Domains Coil G3DSA:1.10.1670.10 G3DSA:1.10.340.30 IPR003265 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00478 SM00525 SSF48150 cd00056 mobidb-lite	18
LotjaGi1g1v0679900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp\|Q9SJQ6\|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr\|A0A0B2QF73\|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900	Domains Coil G3DSA:1.10.1670.10 G3DSA:1.10.340.30 IPR003265 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00478 SM00525 SSF48150 cd00056 mobidb-lite	18
LotjaGi1g1v0679900.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp\|Q9SJQ6\|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr\|A0A0B2QF73\|A0A0B2QF73_GLYSO Protein ROS1; Found in the gene: LotjaGi1g1v0679900	Domains Coil G3DSA:1.10.1670.10 G3DSA:1.10.340.30 IPR003265 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00478 SM00525 SSF48150 cd00056 mobidb-lite	18
LotjaGi2g1v0156400_LC.10 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A0R0EEG0\|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC	Domains G3DSA:1.10.1670.10 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00525 SSF48150	12
LotjaGi2g1v0156400_LC.18 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcriptional activator DEMETER; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A151RHD0\|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC	Domains IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5	6
LotjaGi2g1v0156400_LC.22 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transcriptional activator DEMETER; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A151RHD0\|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC	Domains IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5	6
LotjaGi2g1v0156400_LC.26 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A0R0EEG0\|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC	Domains G3DSA:1.10.1670.10 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00525 SSF48150	12
LotjaGi2g1v0156400_LC.27 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A0R0EEG0\|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC	Domains G3DSA:1.10.1670.10 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00525 SSF48150	12
LotjaGi2g1v0156400_LC.31 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A0R0EEG0\|A0A0R0EEG0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156400_LC	Domains G3DSA:1.10.1670.10 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00525 SSF48150	12
LotjaGi2g1v0156400_LC.9 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT5G04560.1 HhH-GPD base excision DNA repair family protein; Swiss-Prot: sp\|Q8LK56\|DME_ARATH Transcriptional activator DEMETER; TrEMBL-Plants: tr\|A0A151RHD0\|A0A151RHD0_CAJCA Transcriptional activator DEMETER; Found in the gene: LotjaGi2g1v0156400_LC	Domains G3DSA:1.10.1670.10 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00525 SSF48150	12
LotjaGi5g1v0090900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA glycosylase; TAIR: AT2G36490.1 demeter-like 1; Swiss-Prot: sp\|Q9SJQ6\|ROS1_ARATH Protein ROS1; TrEMBL-Plants: tr\|K7LHS4\|K7LHS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0090900_LC	Domains Coil G3DSA:1.10.1670.10 G3DSA:1.10.340.30 IPR003265 IPR003651 IPR011257 IPR023170 IPR028924 IPR028925 PF15628 PF15629 PTHR46213 PTHR46213:SF5 SM00478 SM00525 SSF48150 cd00056 mobidb-lite	18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09