Description

IPR033411 is a Ribonuclease, PIN domain.

<p>This is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [[cite:PUB00059642]].</p> <p>RNA-binding protein NOB1 has a nuclear location [[cite:PUB00078774]] and contains a PIN domain and binds a single zinc ion. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [[cite:PUB00073513]]. It is also required for maturation of the small subunit ribosomal RNA by catalyzing cleavage at site D after export of the preribosomal subunit into the cytoplasm. Nob1 is also found in archaea, where it is manganese-dependent and also processes RNA-substrates [[cite:PUB00059642]]. This domain can also be found in VapC1, which is a toxic component and a ribonuclease of a toxin-antitoxin (TA) module [[cite:PUB00078758]].</p> <p>PIN domains are small protein domains identified by the presence of three strictly conserved acidic residues. Apart from these three residues, there is poor sequence conservation [[cite:PUB00059173]]. PIN domains are found in eukaryotes, eubacteria and archaea. In eukaryotes they are ribonucleases involved in nonsense mediated mRNA decay [[cite:PUB00041532]] and in processing of 18S ribosomal RNA [[cite:PUB00067507]]. In prokaryotes, they are the toxic components of toxin-antitoxin (TA) systems, their toxicity arising by virtue of their ribonuclease activity. The PIN domain TA systems are now called VapBC TAs(virulence associated proteins), where VapB is the inhibitor and VapC, the PIN-domain ribonuclease toxin [[cite:PUB00059173]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 2

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space: